[3dem] [EXTERNAL] Re: Compiling AreTomo3

[Reza Khayat]

Hi,

Michael D. Purdy's suggestion to compile the libraries in LibSrc solved the problem -noted in the AreTomo3 document. Thanks to all.

Best wishes,
Reza
________________________________
From: Sylvain Trepout <sylvain.trepout at monash.edu>
Sent: 25 July 2024 9:37 PM
To: Reza Khayat <rkhayat at ccny.cuny.edu>
Cc: 3dem at ncmir.ucsd.edu <3dem at ncmir.ucsd.edu>
Subject: [EXTERNAL] Re: [3dem] Compiling AreTomo3

Hi Reza,

Several solutions here:
https://urldefense.com/v3/__https://github.com/czimaginginstitute/MotionCor3/issues/11__;!!Mih3wA!BLrL-qIO_F6d2rYTOxhZWvA-kI5yk5M1a8YPDdgys6o97RRgC8CHsHWQ5neVrb-Xjrh3rGTBkzDTmCLNyV44ZlT0$ <https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_czimaginginstitute_MotionCor3_issues_11&d=DwMFaQ&c=4NmamNZG3KTnUCoC6InoLJ6KV1tbVKrkZXHRwtIMGmo&r=1DzJFW0v6TgEhkW1gy_-ke-RbtvS1fzEbD5_hcb9Up0&m=eU-y7UjEgRaTD-CiB2ywlCluuGwBfXJ0EkJ1VyyweCzTjzVmhvmllD0Mbr2F-8un&s=y5LWexv81ahQIG8jsuDf9rAhlAJFW9XbwzwAhdbKvIs&e=>

Best,
Sylvain

PhD
Research Fellow - Microscopy Australia

Monash University

Ramaciotti Centre for Cryo-EM
G92, 15 Innovation Walk, Clayton Campus
Victoria, 3800 Australia

E: sylvain.trepout at monash.edu<mailto:sylvain.trepout at monash.edu>


On Fri, 26 Jul 2024 at 03:12, Reza Khayat <rkhayat at ccny.cuny.edu<mailto:rkhayat at ccny.cuny.edu>> wrote:
Hi,

We are getting the following error when compiling AreTomo3. The error occurs for a number of  files being compiled.  Any help would be appreciated:

/usr/bin/ld: /home/rkhayat/Applications/AreTomo3/LibSrc/Lib/libmrcfile.a(CSaveMainHeader.o): relocation R_X86_64_32 against symbol __gxx_personality_v0@@CXXABI_1.3' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /home/rkhayat/Applications/AreTomo3/LibSrc/Lib/libmrcfile.a(CLoadImage.o): relocation R_X86_64_32 against symbol __gxx_personality_v0@@CXXABI_1.3' can not be used when making a PIE object; recompile with -fPIE

Bes
Reza Khayat, PhD
City College of New York
Associate Professor
Department of Chemistry and Biochemistry
Co-Director NIH G-RISE program

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