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Hi,</div>
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Michael D. Purdy's suggestion to compile the libraries in LibSrc solved the problem -noted in the AreTomo3 document. Thanks to all. </div>
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Best wishes,<br>
Reza</div>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>From:</b> Sylvain Trepout <sylvain.trepout@monash.edu><br>
<b>Sent:</b> 25 July 2024 9:37 PM<br>
<b>To:</b> Reza Khayat <rkhayat@ccny.cuny.edu><br>
<b>Cc:</b> 3dem@ncmir.ucsd.edu <3dem@ncmir.ucsd.edu><br>
<b>Subject:</b> [EXTERNAL] Re: [3dem] Compiling AreTomo3</font>
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<div dir="ltr">Hi Reza,
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<div>Several solutions here:</div>
<div><a href="https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_czimaginginstitute_MotionCor3_issues_11&d=DwMFaQ&c=4NmamNZG3KTnUCoC6InoLJ6KV1tbVKrkZXHRwtIMGmo&r=1DzJFW0v6TgEhkW1gy_-ke-RbtvS1fzEbD5_hcb9Up0&m=eU-y7UjEgRaTD-CiB2ywlCluuGwBfXJ0EkJ1VyyweCzTjzVmhvmllD0Mbr2F-8un&s=y5LWexv81ahQIG8jsuDf9rAhlAJFW9XbwzwAhdbKvIs&e=">https://github.com/czimaginginstitute/MotionCor3/issues/11</a></div>
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<div>Best,</div>
<div>Sylvain<br clear="all">
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<p style="color:rgb(34,34,34); margin-bottom:0px"><span style="color:rgb(80,80,80); font-family:sans-serif">PhD</span><br>
Research Fellow - Microscopy Australia</p>
<p style="color:rgb(34,34,34); margin-bottom:0px"><b>Monash University</b><br>
</p>
<span style="color:rgb(34,34,34)">Ramaciotti Centre for Cryo-EM</span><br style="color:rgb(34,34,34)">
<span style="color:rgb(34,34,34)">G</span><span style="color:rgb(34,34,34)">92, 15 Innovation Walk, Clayton Campus</span><br style="color:rgb(34,34,34)">
<span style="color:rgb(34,34,34)">Victoria, 3800 Australia</span>
<p style="color:rgb(80,80,80); font-family:sans-serif; margin-bottom:0px">E: <a href="mailto:sylvain.trepout@monash.edu" target="_blank" style="color:rgb(17,85,204)">
sylvain.trepout@monash.edu</a></p>
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<div dir="ltr" class="x_gmail_attr">On Fri, 26 Jul 2024 at 03:12, Reza Khayat <<a href="mailto:rkhayat@ccny.cuny.edu">rkhayat@ccny.cuny.edu</a>> wrote:<br>
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Hi,</div>
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We are getting the following error when compiling AreTomo3. The error occurs for a number of files being compiled. Any help would be appreciated:</div>
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/usr/bin/ld: /home/rkhayat/Applications/AreTomo3/LibSrc/Lib/libmrcfile.a(CSaveMainHeader.o): relocation R_X86_64_32 against symbol
<span><code>__gxx_personality_v0@@CXXABI_1.3' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /home/rkhayat/Applications/AreTomo3/LibSrc/Lib/libmrcfile.a(CLoadImage.o): relocation R_X86_64_32 against symbol
</code></span>__gxx_personality_v0@@CXXABI_1.3' can not be used when making a PIE object; recompile with -fPIE</div>
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Bes</div>
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Reza Khayat, PhD</div>
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City College of New York</div>
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Associate Professor</div>
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Department of Chemistry and Biochemistry</div>
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Co-Director NIH G-RISE program</div>
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