[3dem] RELION low_resol_join_halves parameter

[Craig Yoshioka]

I’ve started the job in the GUI, killed it, then rerun from the CLI with the same output (change the output dir to match).  Easiest way I’ve found to do it if you don’t want the GUI to lose track of the job.


On Dec 12, 2017, at 9:02 AM, Buecker, Robert <robert.buecker at mpsd.mpg.de<mailto:robert.buecker at mpsd.mpg.de>> wrote:

Dear list,

I am currently working on a single-particle reconstruction in RELION at unusually low resolutions (worse than 100A).
I noticed, that when running a 3D auto-refine job through the GUI, it will supply a "--low_resol_join_halves 40"-option to relion_refine_mpi, which cannot seem to be overriden. However, due to the low resolution of our data, I'd need that parameter to be significantly higher (at 40, my reported FSCs remain at 1 up to a sharp cutoff, which is expected as the FSC is from a joined set up to almost the resolution). Does anybody know a workaround, apart from not using the GUI at all?

Thanks in advance and best wishes from Hamburg,
Robert

--
dr. robert bücker
 max planck institute for the structure and dynamics of matter
 atomically resolved dynamics department
 desy bldg. 99 (cfel)
 luruper chaussee 149
 22761 hamburg, germany
 tel. +49 40 8998-6278 / -86043
 mob. +49 157 70210628

 robert.buecker at mpsd.mpg.de<mailto:robert.buecker at mpsd.mpg.de>
 http://www.mpsd.mpg.de/68786/Femtosecond_Diffraction

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