[3dem] CryoSPARC v4.6 now available

Ali Punjani apunjani at structura.bio
Tue Sep 10 09:10:22 PDT 2024


Dear 3DEM,

We are pleased to announce that CryoSPARC v4.6 has been released today with
a number of updates. The full list is detailed in the changelog:
https://urldefense.com/v3/__https://cryosparc.com/updates__;!!Mih3wA!F7lU4vnfrElwJu81J8p8v6YzBYEcNcmS0WkUZ0eunjKH0awGsb52dKqFjH72vArrFoNmUF33F1_Fogow9tdRWvVA$ 

A few highlights:

   - Up to 2.1x speedup across refinement and classification jobs.
   Homogeneous refinement of 2.3M particles (box size 300) now takes just 27
   minutes on a single GPU.
   - Tree, card, and table views
   <https://urldefense.com/v3/__https://guide.cryosparc.com/application-guide-v4.0*/job-views-cards-tree-and-table__;Kw!!Mih3wA!F7lU4vnfrElwJu81J8p8v6YzBYEcNcmS0WkUZ0eunjKH0awGsb52dKqFjH72vArrFoNmUF33F1_Fogow9lqEbMVw$ >
   for jobs are rebuilt, with dramatic speedups to support large projects. Up
   to 10x faster load time for the tree view and nearly instant interactive
   updates.
   - New Job Groups
   <https://urldefense.com/v3/__https://guide.cryosparc.com/application-guide-v4.0*/job-views-cards-tree-and-table*job-groups__;KyM!!Mih3wA!F7lU4vnfrElwJu81J8p8v6YzBYEcNcmS0WkUZ0eunjKH0awGsb52dKqFjH72vArrFoNmUF33F1_Fogow9ke0g4-p$ >
   allow collapsing multiple jobs into a single card in order to organize,
   maintain legibility, and keep navigation easy for large projects. Job
   Groups work across all views, and can be made using multi-selection and the
   right-click menu.
   - Inspect Particle Picks
   <https://urldefense.com/v3/__https://guide.cryosparc.com/application-guide-v4.0*/interactive-jobs*auto-clustering__;KyM!!Mih3wA!F7lU4vnfrElwJu81J8p8v6YzBYEcNcmS0WkUZ0eunjKH0awGsb52dKqFjH72vArrFoNmUF33F1_Fogow9hCZdBe4$ >
   can now run without user intervention using a new Auto Cluster mode.
   Particles are clustered and automatically selected based on their NCC and
   power scores.

Alongside the release, we are continually updating our educational
materials and guides. Some recent items:

   - Case Study: End-to-end processing of an inactive GPCR
   (EMPIAR-10668): We cover end to end processing for a 73 kDa membrane
   protein
   <https://urldefense.com/v3/__https://guide.cryosparc.com/processing-data/tutorials-and-case-studies/case-study-end-to-end-processing-of-an-inactive-gpcr-empiar-10668__;!!Mih3wA!F7lU4vnfrElwJu81J8p8v6YzBYEcNcmS0WkUZ0eunjKH0awGsb52dKqFjH72vArrFoNmUF33F1_Fogow9rLYfS1A$ >
through
   to generating maps ready for model building, as well as analyzing and
   separating states within a continuous motion.
   - Updated Guide Pages - Motion Correction: We have added a new overview
   page
   <https://urldefense.com/v3/__https://guide.cryosparc.com/processing-data/all-job-types-in-cryosparc/motion-correction__;!!Mih3wA!F7lU4vnfrElwJu81J8p8v6YzBYEcNcmS0WkUZ0eunjKH0awGsb52dKqFjH72vArrFoNmUF33F1_Fogow9qS1rbkL$ >
which
   explains why motion correction is important, the differences between
   various jobs and when each is appropriate, and the motivation behind dose
   weighting during motion correction. Patch Motion Correction
   <https://urldefense.com/v3/__https://guide.cryosparc.com/processing-data/all-job-types-in-cryosparc/motion-correction/job-patch-motion-correction__;!!Mih3wA!F7lU4vnfrElwJu81J8p8v6YzBYEcNcmS0WkUZ0eunjKH0awGsb52dKqFjH72vArrFoNmUF33F1_Fogow9mlwzHD4$ >
and
   the other job pages in this section have also been updated.

For update instructions, please see:
https://urldefense.com/v3/__https://guide.cryosparc.com/setup-configuration-and-management/software-updates__;!!Mih3wA!F7lU4vnfrElwJu81J8p8v6YzBYEcNcmS0WkUZ0eunjKH0awGsb52dKqFjH72vArrFoNmUF33F1_Fogow9ie0p6ga$ 


Thank you!

The CryoSPARC Team
Structura Biotechnology Inc.
cryosparc.com
structura.bio
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