[3dem] ThermoFisher XML files

[Grigory Sharov]

Hi,

depending on your end goal, you can do it manually with Python, e.g.
https://urldefense.proofpoint.com/v2/url?u=https-3A__docs.python.org_3_library_xml.etree.elementtree.html&d=DwIBaQ&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=AyQ2YTQ9pzEZsHJ8bRfXFrnTTWdFlvIdI6hL65HD2S4&s=ruarfMl5Efb0aSHJ9uIl4NQGIDHCh1GvlOriRVlYkCc&e= 
You can look at the examples in my parser:
https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_azazellochg_MDCatch&d=DwIBaQ&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=AyQ2YTQ9pzEZsHJ8bRfXFrnTTWdFlvIdI6hL65HD2S4&s=LXsFjOgDa-cHojmAcDnI4IXiZvrG35pv4kTLs9Pvcp4&e=  However I don't extract stage
coordinates or parse dm files.

Or you can try https://urldefense.proofpoint.com/v2/url?u=https-3A__www.cryoflare.org_&d=DwIBaQ&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=AyQ2YTQ9pzEZsHJ8bRfXFrnTTWdFlvIdI6hL65HD2S4&s=QF98ReW9ZPPgy1OKROc62Nj6EjT4fv_iZe33Pkv5Tck&e=  for out-of-the-box solution

Best regards,
Grigory

--------------------------------------------------------------------------------
Grigory Sharov, Ph.D.

MRC Laboratory of Molecular Biology,
Francis Crick Avenue,
Cambridge Biomedical Campus,
Cambridge CB2 0QH, UK.
tel. +44 (0) 1223 267228 <+44%201223%20267228>
e-mail: gsharov at mrc-lmb.cam.ac.uk


On Mon, Oct 11, 2021 at 8:31 PM Morgan, David Gene <dagmorga at indiana.edu>
wrote:

> Hi,
>
> Maybe I have missed something simple, but does anyone have a good way to
> extract useful information from the XML and dm files that are generated by
> EPU?  I'm specifically interested in stage positions for the atlas images
> (which I hope is recorded there), but I'm sure there is other information
> that would be useful in some of these files.
>
> Thanks in advance.
>
> --
>     politics is more difficult than physics.
>                                              A. Einstein
>
>             David Gene Morgan
>         Electron Microscopy Center
>              047E Simon Hall
>              IU Bloomington
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