<div dir="ltr">Hi,<div><br></div><div>depending on your end goal, you can do it manually with Python, e.g. <a href="https://urldefense.proofpoint.com/v2/url?u=https-3A__docs.python.org_3_library_xml.etree.elementtree.html&d=DwMFaQ&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=AyQ2YTQ9pzEZsHJ8bRfXFrnTTWdFlvIdI6hL65HD2S4&s=ruarfMl5Efb0aSHJ9uIl4NQGIDHCh1GvlOriRVlYkCc&e=">https://docs.python.org/3/library/xml.etree.elementtree.html</a></div><div>You can look at the examples in my parser: <a href="https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_azazellochg_MDCatch&d=DwMFaQ&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=AyQ2YTQ9pzEZsHJ8bRfXFrnTTWdFlvIdI6hL65HD2S4&s=LXsFjOgDa-cHojmAcDnI4IXiZvrG35pv4kTLs9Pvcp4&e=">https://github.com/azazellochg/MDCatch</a> However I don't extract stage coordinates or parse dm files.</div><div><br></div><div>Or you can try <a href="https://urldefense.proofpoint.com/v2/url?u=https-3A__www.cryoflare.org_&d=DwMFaQ&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=AyQ2YTQ9pzEZsHJ8bRfXFrnTTWdFlvIdI6hL65HD2S4&s=QF98ReW9ZPPgy1OKROc62Nj6EjT4fv_iZe33Pkv5Tck&e=">https://www.cryoflare.org/</a> for out-of-the-box solution</div><div><br clear="all"><div><div dir="ltr" class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div style="color:rgb(0,0,0)"><font face="arial, helvetica, sans-serif" size="2"><span style="font-size:10pt">Best regards,<br>Grigory</span></font></div><div style="color:rgb(0,0,0)"><font face="arial, helvetica, sans-serif" size="2"><span style="font-size:10pt"><br></span></font></div><div style="color:rgb(0,0,0)"><font face="arial, helvetica, sans-serif" size="2"><span style="font-size:10pt">--------------------------------------------------------------------------------</span></font></div><div style="color:rgb(0,0,0)"><span style="font-size:12.8px">Grigory Sharov, Ph.D.</span><br style="font-size:12.8px"><br style="font-size:12.8px"><span style="font-size:12.8px">MRC Laboratory of Molecular Biology,</span><br style="font-size:12.8px"><span style="font-size:12.8px">Francis Crick Avenue,</span><br style="font-size:12.8px"><span style="font-size:12.8px">Cambridge Biomedical Campus,</span><br style="font-size:12.8px"><span style="font-size:12.8px">Cambridge CB2 0QH, UK.</span><br style="font-size:12.8px"><span style="font-size:12.8px">tel. </span><a href="tel:+44%201223%20267228" value="+441223267542" style="color:rgb(17,85,204);font-size:12.8px" target="_blank">+44 (0) 1223 267228</a></div><div style="color:rgb(0,0,0)"><span style="font-size:12.8px">e-mail: </span><a href="mailto:gsharov@mrc-lmb.cam.ac.uk" style="color:rgb(17,85,204);font-size:12.8px" target="_blank">gsharov@mrc-lmb.cam.ac.uk</a><br></div></div></div></div></div></div></div></div></div></div></div></div></div><br></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Mon, Oct 11, 2021 at 8:31 PM Morgan, David Gene <<a href="mailto:dagmorga@indiana.edu">dagmorga@indiana.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
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Hi,</div>
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Maybe I have missed something simple, but does anyone have a good way to extract useful information from the XML and dm files that are generated by EPU? I'm specifically interested in stage positions for the atlas images (which I hope is recorded there), but
I'm sure there is other information that would be useful in some of these files.</div>
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Thanks in advance.<br>
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