[3dem] automated virus analysis in EM images

[Adrian Wanner]

Dear Colleagues,

In the past few days our machine-learning team at ariadne.ai 
<https://ariadne.ai> has worked on automated segmentation/detection of 
virus particles in EM images.

Please get in touch if
- you would be interested in collaborating
- a similar type of analysis could be useful for your virology research
- you have libraries of additional EM images of viruses to share (any 
virus type/class, but in particular SARS-CoV-2)
- you have any useful feedback on what to improve in the detection

We are looking for collaborators that would like to work with us to 
further improve the automated virus analysis, e.g. for automated virus 
classification.
The attached image shows automatically detected HSV virus particles that 
have been segmented by our prototype algorithm without any human 
intervention/annotation (image source: 
https://figshare.com/articles/Untitled_Item/8131241/2) .

Best,
Adrian



On 05.02.20 21:34, Adrian Wanner wrote:
> Dear Colleagues,
>
> We just added *mitochondria cristae reconstruction* to 3dEMtrace 
> <https://ariadne.ai/3dEMtrace>, the first online organelle 
> segmentation service for volume electron microscopy data. In addition 
> to reconstruction of nuclei, mitochondria, endoplasmic reticula and 
> synaptic junctions we also of custom workflow development for your 
> structure of choice.
>
> Just go to https://ariadne.ai/3dEMtrace, upload your data and 
> ariadne.ai <https://ariadne.ai> takes it from there.
>
> Best,
>
> Adrian Wanner
>
> Follow us on twitter <https://twitter.com/ariadne_ai>
>

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