[3dem] SHape REtrieval Contest (SHREC) 2020 track "Classification in Cryo-Electron Tomograms"

[Gubins, I. (Ilja)]

Dear Steven and others who might be interested in participating in SHREC 2020,

The results from SHREC 2019 are available here: http://www.shrec.net/cryo-et/2019/
There are links to the dataset (both what was available to the participants and the full version, with annotations of test tomogram) and the link to Eurographics Library with the joint track paper.

Please let us know if there are any other questions!

My best,
Ilja Gubins

________________________________
From: 3dem <3dem-bounces at ncmir.ucsd.edu> on behalf of Ludtke, Steven J. <sludtke at bcm.edu>
Sent: Thursday, March 5, 2020 11:07 PM
To: Förster, F.G. (Friedrich) <f.g.forster at uu.nl>
Cc: 3dem at ncmir.ucsd.edu <3dem at ncmir.ucsd.edu>
Subject: Re: [3dem] SHape REtrieval Contest (SHREC) 2020 track "Classification in Cryo-Electron Tomograms"

Hi Fredrich,
were the results from the last one ever made publicly available? Is the data and/or results of the last one available online somewhere?  I looked briefly, and could find websites mentioning it, but little else?   Not much motivation to participate if the results are all closed (other than resulting publications, of course).

--------------------------------------------------------------------------------------
Steven Ludtke, Ph.D. <sludtke at bcm.edu<mailto:sludtke at bcm.edu>>                      Baylor College of Medicine
Charles C. Bell Jr., Professor of Structural Biology
Dept. of Biochemistry and Molecular Biology                      (www.bcm.edu/biochem<http://www.bcm.edu/biochem>)
Academic Director, CryoEM Core                                        (cryoem.bcm.edu<http://cryoem.bcm.edu>)
Co-Director CIBR Center                                    (www.bcm.edu/research/cibr<http://www.bcm.edu/research/cibr>)



On Mar 5, 2020, at 2:32 PM, Friedrich Förster <f.g.forster at uu.nl<mailto:f.g.forster at uu.nl>> wrote:

***CAUTION:*** This email is not from a BCM Source. Only click links or open attachments you know are safe.
________________________________

Dear 3D-EM,



We would like to announce SHape REtrieval Contest (SHREC) 2020 track "Classification in Cryo-Electron Tomograms". In this track, we propose a task of localization and classification of biological particles in the cryo-electron tomograms. We provide a dataset of simulated tomograms with annotations and additional ground truth information. We hope this will enable researchers to try out different methods, including machine learning approaches.



Track participants will have 4 weeks to send us their results (text file with a list of found and classified particles, and one-page description of their method). Track results are evaluated, analyzed and combined into a joint paper, that will be submitted to and presented at 3D Object Retrieval Workshop, 4-5 September 2020: https://workshop.cgv.tugraz.at/3dor2020/<https://urldefense.proofpoint.com/v2/url?u=https-3A__workshop.cgv.tugraz.at_3dor2020_&d=DwMFaQ&c=ZQs-KZ8oxEw0p81sqgiaRA&r=Dk5VoQQ-wINYVssLMZihyC5Dj_sWYKxCyKz9E4Lp3gc&m=WQWsg1ffsdRMpCT3N2KurlValKUv0BSA79S5TEtJwJI&s=ZRhUa-_ujY1hScNGihjC3eox3CQMLTVVLJNwpVIO8No&e=>

The general objective of the SHREC is to evaluate the effectiveness and compare localization and classification methods.



If you are interested, please check out the website for more information: http://www.shrec.net/cryo-et/<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.shrec.net_cryo-2Det_&d=DwMFaQ&c=ZQs-KZ8oxEw0p81sqgiaRA&r=Dk5VoQQ-wINYVssLMZihyC5Dj_sWYKxCyKz9E4Lp3gc&m=WQWsg1ffsdRMpCT3N2KurlValKUv0BSA79S5TEtJwJI&s=Na6EdCP08UsaaLiGVvgtlDpGfo_I_7UqfTLhyFVjTpY&e=>



Best regards



Ilja Gubins, Gijs van der Schot, Marten Chaillet, Remco Veltkamp, Friedrich Förster

--
prof. dr. Friedrich Foerster

Bijvoet Center for Biomolecular Research
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands

Tel: +31 30 253 4318

http://www.uu.nl/en/research/cryo-em<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.uu.nl_en_research_cryo-2Dem&d=DwMFaQ&c=ZQs-KZ8oxEw0p81sqgiaRA&r=Dk5VoQQ-wINYVssLMZihyC5Dj_sWYKxCyKz9E4Lp3gc&m=WQWsg1ffsdRMpCT3N2KurlValKUv0BSA79S5TEtJwJI&s=AzonDRX9DtQIG5Ieb7z1Fm4BfNFNs1S76l_r2Sd6sKM&e=>
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