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Dear Steven and others who might be interested in participating in SHREC 2020,</div>
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The results from SHREC 2019 are available here: <a href="http://www.shrec.net/cryo-et/2019/" target="_blank" rel="noopener noreferrer" style="">
http://www.shrec.net/cryo-et/2019/</a><br>
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There are links to the dataset (both what was available to the participants and the full version, with annotations of test tomogram) and the link to Eurographics Library with the joint track paper.<br>
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Please let us know if there are any other questions!</div>
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My best,</div>
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Ilja Gubins</div>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>From:</b> 3dem <3dem-bounces@ncmir.ucsd.edu> on behalf of Ludtke, Steven J. <sludtke@bcm.edu><br>
<b>Sent:</b> Thursday, March 5, 2020 11:07 PM<br>
<b>To:</b> Förster, F.G. (Friedrich) <f.g.forster@uu.nl><br>
<b>Cc:</b> 3dem@ncmir.ucsd.edu <3dem@ncmir.ucsd.edu><br>
<b>Subject:</b> Re: [3dem] SHape REtrieval Contest (SHREC) 2020 track "Classification in Cryo-Electron Tomograms"</font>
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<div class="" style="word-wrap:break-word; line-break:after-white-space">Hi Fredrich,
<div class="">were the results from the last one ever made publicly available? Is the data and/or results of the last one available online somewhere? I looked briefly, and could find websites mentioning it, but little else? Not much motivation to participate
if the results are all closed (other than resulting publications, of course).</div>
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<font face="Courier" class=""><span class="" style="font-size:14px">--------------------------------------------------------------------------------------<br class="">
Steven Ludtke, Ph.D. <<a href="mailto:sludtke@bcm.edu" class="">sludtke@bcm.edu</a>> Baylor College of Medicine <br class="">
Charles C. Bell Jr., Professor of Structural Biology<br class="">
Dept. of Biochemistry and Molecular Biology (<a href="http://www.bcm.edu/biochem" class="">www.bcm.edu/biochem</a>)<br class="">
Academic Director, CryoEM Core (<a href="http://cryoem.bcm.edu" class="">cryoem.bcm.edu</a>)<br class="">
Co-Director CIBR Center (<a href="http://www.bcm.edu/research/cibr" class="">www.bcm.edu/research/cibr</a>)<br class="">
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<div class="">On Mar 5, 2020, at 2:32 PM, Friedrich Förster <<a href="mailto:f.g.forster@uu.nl" class="">f.g.forster@uu.nl</a>> wrote:</div>
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<div class=""><font size="2" class=""><b class="">***CAUTION:*** This email is not from a BCM Source. Only click links or open attachments you know are safe.</b></font>
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<a name="x__GoBack" class=""></a>Dear 3D-EM,<span class=""></span></p>
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We would like to announce SHape REtrieval Contest (SHREC) 2020 track "Classification in Cryo-Electron Tomograms". In this track, we propose a task of localization and classification of biological particles in the cryo-electron tomograms. We provide a dataset
of simulated tomograms with annotations and additional ground truth information. We hope this will enable researchers to try out different methods, including machine learning approaches.<span class=""></span></p>
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Track participants will have 4 weeks to send us their results (text file with a list of found and classified particles, and one-page description of their method). Track results are evaluated, analyzed and combined into a joint paper, that will be submitted
to and presented at 3D Object Retrieval Workshop, 4-5 September 2020: <a href="https://urldefense.proofpoint.com/v2/url?u=https-3A__workshop.cgv.tugraz.at_3dor2020_&d=DwMFaQ&c=ZQs-KZ8oxEw0p81sqgiaRA&r=Dk5VoQQ-wINYVssLMZihyC5Dj_sWYKxCyKz9E4Lp3gc&m=WQWsg1ffsdRMpCT3N2KurlValKUv0BSA79S5TEtJwJI&s=ZRhUa-_ujY1hScNGihjC3eox3CQMLTVVLJNwpVIO8No&e=" target="_blank" class="" style="color:rgb(149,79,114)">https://workshop.cgv.tugraz.at/3dor2020/</a><span class=""></span></p>
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The general objective of the SHREC is to evaluate the effectiveness and compare localization and classification methods. <span class=""></span></p>
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If you are interested, please check out the website for more information: <a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__www.shrec.net_cryo-2Det_&d=DwMFaQ&c=ZQs-KZ8oxEw0p81sqgiaRA&r=Dk5VoQQ-wINYVssLMZihyC5Dj_sWYKxCyKz9E4Lp3gc&m=WQWsg1ffsdRMpCT3N2KurlValKUv0BSA79S5TEtJwJI&s=Na6EdCP08UsaaLiGVvgtlDpGfo_I_7UqfTLhyFVjTpY&e=" target="_blank" class="" style="color:rgb(149,79,114)">http://www.shrec.net/cryo-et/</a><span class=""></span></p>
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Best regards<span class=""></span></p>
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Ilja Gubins, Gijs van der Schot, Marten Chaillet, Remco Veltkamp, Friedrich Förster<span class=""></span></p>
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<div class="">prof. dr. Friedrich Foerster<br class="">
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<div class="">Bijvoet Center for Biomolecular Research<br class="">
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<div class="">Utrecht University<br class="">
Padualaan 8<br class="">
3584 CH Utrecht<br class="">
The Netherlands</div>
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<div class="">Tel: <span class="">+31 30 253 4318</span><br class="">
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<span class=""><a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__www.uu.nl_en_research_cryo-2Dem&d=DwMFaQ&c=ZQs-KZ8oxEw0p81sqgiaRA&r=Dk5VoQQ-wINYVssLMZihyC5Dj_sWYKxCyKz9E4Lp3gc&m=WQWsg1ffsdRMpCT3N2KurlValKUv0BSA79S5TEtJwJI&s=AzonDRX9DtQIG5Ieb7z1Fm4BfNFNs1S76l_r2Sd6sKM&e=" target="_blank" class="">http://www.uu.nl/en/research/cryo-em</a></span><br class="">
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