[3dem] K2 files
James B
jbouwer at ucsd.edu
Thu Sep 22 12:01:49 PDT 2016
Hi Mike,
Try dm2mrc() in the IMOD package.
-James
http://bio3d.colorado.edu/imod/doc/man/dm2mrc.html
James Bouwer, Ph.D.
Physicist - Manager Cryo-Electron Microscopy Facility
University of California, San Diego
Department of Chemistry and Biochemistry
Bonner Hall 1510
9500 Gilman Drive
La Jolla, CA, 92093-0378
(858) 822-6718
jbouwer at ucsd.edu <mailto:jbouwer at ucsd.edu>
> On Sep 22, 2016, at 8:20 AM, Mike Strauss <mikestrauss13 at crystal.harvard.edu> wrote:
>
> Have you tried the EMAN suite? Maybe e2proc2d.py ?
>
> mike
>
> On Thu, Sep 22, 2016 at 9:57 AM, michael schatz <michael at imagescience.de <mailto:michael at imagescience.de>> wrote:
> Hi Eric,
>
> Did you try em2em (https://www.imagescience.de/download.html#em2em <https://www.imagescience.de/download.html#em2em>)?
> But I am not sure if em2em can handle your type of DM4 images.
>
> Regards
> Michael
>
> ==
>
> Eric Gilles Hanssen wrote:
>> Little precisions:
>> - have tried imod dm2mrc. Not working for me <>
>> - The image stacks are K2 dose fractionation for single particles, not sure if the format is the same then a tilt series for tomography.
>>
>>
>>
>> Regards
>>
>> Eric
>>
>>
>>
>>
>>
>> From: 3dem [mailto:3dem-bounces at ncmir.ucsd.edu <mailto:3dem-bounces at ncmir.ucsd.edu>] On Behalf Of Eric Gilles Hanssen
>> Sent: Thursday, 22 September 2016 1:34 PM
>> To: 3dem at ncmir.ucsd.edu <mailto:3dem at ncmir.ucsd.edu>
>> Subject: [3dem] K2 files
>>
>>
>>
>> Hi all,
>>
>> I have a fair amount of .dm4 image stacks from a K2 camera. they are all too big (2.7GB) for my windows 32bit version of DM (yes i know I should upgrade to 64 bits, soon) . I would like to open these images with MOTIONCORR on my linux system.
>>
>> Is there any way of transforming the .dm4 in .mrc stacks without DM?
>> regards
>>
>> Eric
>>
>
> --
>
> ======================
>
> Michael Schatz
> Image Science Software GmbH
>
> Gillweg 3
> D - 14193 Berlin
> Germany
>
> Besuchereingang / Entrance:
> Hubertusallee
>
> Tel: +49 30 8909 5326 <tel:%2B49%2030%208909%205326>
> Fax: +49 30 8909 5321 <tel:%2B49%2030%208909%205321>
> URL: www. ImageScience .de
>
> Geschäftsführer/Managing Director
> Michael Schatz
>
> HRB: 33106 Berlin-Charlottenburg
> VAT/USt-Id-Nr. DE 136613484
>
> ======================
>
> _______________________________________________
> 3dem mailing list
> 3dem at ncmir.ucsd.edu <mailto:3dem at ncmir.ucsd.edu>
> https://mail.ncmir.ucsd.edu/mailman/listinfo/3dem <https://mail.ncmir.ucsd.edu/mailman/listinfo/3dem>
>
>
> _______________________________________________
> 3dem mailing list
> 3dem at ncmir.ucsd.edu
> https://mail.ncmir.ucsd.edu/mailman/listinfo/3dem
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ncmir.ucsd.edu/pipermail/3dem/attachments/20160922/edf209b6/attachment.html>
More information about the 3dem
mailing list