[3dem] using nad_eed

[Tobias Starborg]

Lea,

Unless I'm mistaken the program you are trying to run is part of the 
IMOD suite written by the people in Boulder Colorado (bio3d.colorado.edu). 
Your command looks fine to me, so assuming that you ran it from the 
correct folder (ie tomo.rec is on your Desktop, in this example), and 
that tomo.rec is in MRC format, then I'm not too sure where the command 
has gone wrong.  I would suggest that you join the IMOD users list 
(http://bio3d.colorado.edu/imod/joinlist.html) and email the same 
question to them.  There will be more users there to help you with this 
specific program, and someone will be able to help you set up the 
parallel processing, as this is more complicated.

Toby S

Léa wrote:
> Dear all, 
>
> I'd like to use the nad_eed _3d program to denoise some tomograms. I 
> made a small stack to test the different parameters but I get the 
> following error message:
>
> bcsmac68:~/Desktop lea$ nad_eed_3d -i 3,6,9,12,15,18,21 -k 1.2 
> tomo.rec tomo.nad
>
> Program nad_eed_3d
>         started at: Tue Nov  4 15:27:30 2008
> input file:          tomo.rec
> output file:         tomo.nad
> ERROR: nad_eed_3d - reading header of input file tomo.rec
>
> Any idea how to solve this?
>
> Otherwise I also tried to do this using the parallel processing but I 
> didn't manage to have it proccessing...
>
> Many thanks for your help!
>
>
> Lea Siksou
>
>
> PhD student
>
> INSERM U789 - Biologie Cellulaire de la Synapse Normale et Pathologique
>
> Ecole Normale Superieure
>
> 46 rue d'Ulm
>
> 75005 Paris 
>
> France
>
>
> tel: 00331 4432 3533
>
>

-- 
Dr T Starborg
FLS, University of Manchester
Michael Smith Building, Rumford Street, Manchester,M13 9PL. UK
tel:+44(0)161 275 1557 fax +44(0)161 275 1505