[3dem] using nad_eed

[Christopher Gilpin]

Lea,

As Toby replied,  nad_eed is indeed part of IMOD. 

I just ran a quick test and your syntax for the command is correct and works
fine on a data set I have here. 

 

If your tomo.rec is on your desktop then try using the imod command header
tomo.rec to inspect the file.

 

 Chris

 

 

Christopher J Gilpin Ph.D.
Assistant Professor
Director, Molecular and Cellular Imaging Facility
K1.A04
UT Southwestern Medical Center at Dallas
5323 Harry Hines Boulevard
Dallas, TX 75390-9039
Phone +1 214 648 2827
Fax +1 214 648 6408

From: 3dem-bounces at ncmir.ucsd.edu [mailto:3dem-bounces at ncmir.ucsd.edu] On
Behalf Of Léa
Sent: Thursday, November 06, 2008 3:37 AM
To: 3dem at ncmir.ucsd.edu
Subject: [3dem] using nad_eed 

 

Dear all, 

 

I'd like to use the nad_eed _3d program to denoise some tomograms. I made a
small stack to test the different parameters but I get the following error
message:

 

bcsmac68:~/Desktop lea$ nad_eed_3d -i 3,6,9,12,15,18,21 -k 1.2 tomo.rec
tomo.nad

 

Program nad_eed_3d

        started at: Tue Nov  4 15:27:30 2008

input file:          tomo.rec

output file:         tomo.nad

ERROR: nad_eed_3d - reading header of input file tomo.rec

 

Any idea how to solve this?

 

Otherwise I also tried to do this using the parallel processing but I didn't
manage to have it proccessing...

 

Many thanks for your help!

 

 

Lea Siksou

 

PhD student

INSERM U789 - Biologie Cellulaire de la Synapse Normale et Pathologique

Ecole Normale Superieure

46 rue d'Ulm

75005 Paris 

France

 

tel: 00331 4432 3533

 

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