[3dem] PDB Archive Serves Structures Determined by Integrative and Hybrid Methods (IHM)

[Justin Flatt]

  [1]_Integrative structures available in the PDB archive_

Structures determined by integrative and hybrid structure determination 
methods (IHM) are now available alongside experimental structures in the 
PDB archive. These structures are deposited into and processed by the 
PDB-Dev system. Each IHM structure is issued a PDB ID, reported in the 
PDBx/mmCIF file in the _database_2 category, and "integrative" method 
provenance is captured at 
_struct.pdbx_structure_determination_methodology. Users can access and 
download IHM structures and associated data at 
files.wwpdb.org/pub/pdb_ihm/ [2].

Currently, holding files in JSON format, validation reports (summary and 
full reports) in PDF format, and model files in PDBx/mmCIF format are 
provided.

  	* /pdb_ihm/holdings/ (current holdings, released structures last 
modified dates, unreleased entries)
  	* /pdb_ihm/data/entries/hash/{PDB_id}/validation_reports/ (includes 
summary and full validation reports)
  	* /pdb_ihm/data/entries/hash/{PDB_id}/structures/ (latest version of 
model files)
  	* For example, 
https://urldefense.com/v3/__https://files.wwpdb.org/pub/pdb_ihm/data/entries/zz/8zz1/structures/8zz1.cif.gz__;!!Mih3wA!GdfeFLOAVg1Audlvz-qQ49Rf0S5IlN5CH0_T8-IMokbaHS7j4sB7TbuVvjgATHPEi8BAZQC6b8lWRjZ_7T4QvmMq$ 

Data may be expanded in the future based on community needs. In the near 
future, IHM data will also be available via wwPDB DOI landing pages and 
wwPDB partner websites.

Questions or feedback? Contact deposit-help at mail.wwpdb.org or 
pdb-dev at mail.wwpdb.org.

Links:
------
[1] https://urldefense.com/v3/__https://cdn.rcsb.org/news/2024/ihm-full.png__;!!Mih3wA!GdfeFLOAVg1Audlvz-qQ49Rf0S5IlN5CH0_T8-IMokbaHS7j4sB7TbuVvjgATHPEi8BAZQC6b8lWRjZ_7bUXa-Hb$ 
[2] https://urldefense.com/v3/__https://files.wwpdb.org/pub/pdb_ihm/__;!!Mih3wA!GdfeFLOAVg1Audlvz-qQ49Rf0S5IlN5CH0_T8-IMokbaHS7j4sB7TbuVvjgATHPEi8BAZQC6b8lWRjZ_7UZ738fv$ 
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ncmir.ucsd.edu/pipermail/3dem/attachments/20240814/48887f6c/attachment.html>