[3dem] CryoSPARC v4.4 now available
Ali Punjani
apunjani at structura.bio
Wed Nov 8 07:55:13 PST 2023
Dear 3DEM,
We are pleased to announce the public release of CryoSPARC v4.4.
v4.4 includes major updates for single particle cryo-EM workflows:
- Workflows
<https://urldefense.com/v3/__https://guide.cryosparc.com/application-guide-v4.0*/workflows__;Kw!!Mih3wA!CMbCLHBxRtmQIiciNwl9zePKt3yNgvJXjP7z2alkAfIUjvzqUhKIKLrzEpUCIAcJGbazrMuDh1byXkX2asR0MFFS$ > and
Blueprints
<https://urldefense.com/v3/__https://guide.cryosparc.com/application-guide-v4.0*/blueprints__;Kw!!Mih3wA!CMbCLHBxRtmQIiciNwl9zePKt3yNgvJXjP7z2alkAfIUjvzqUhKIKLrzEpUCIAcJGbazrMuDh1byXkX2aqVlAFTx$ >, two
new systems that make it easy to replicate processing you’ve done before.
Select a chain of jobs to create a templated processing Workflow, and
re-create it in any project or workspace with a single click.
- Reference Based Motion Correction
<https://urldefense.com/v3/__https://guide.cryosparc.com/processing-data/all-job-types-in-cryosparc/motion-correction/job-reference-based-motion-correction-beta__;!!Mih3wA!CMbCLHBxRtmQIiciNwl9zePKt3yNgvJXjP7z2alkAfIUjvzqUhKIKLrzEpUCIAcJGbazrMuDh1byXkX2alozlHeg$ >,
similar to Bayesian Polishing (Zivanov et al., 2019), uses a 3D map to
optimize per-particle motion and improve resolution. It is multi-GPU
optimized, features a new hyperparameter optimization method, includes
support for handling multiple 3D classes simultaneously, and provides the
ability to reuse estimated dose weights on new datasets in Patch Motion
Correction.
- Orientation Diagnostics
<https://urldefense.com/v3/__https://guide.cryosparc.com/processing-data/tutorials-and-case-studies/tutorial-orientation-diagnostics__;!!Mih3wA!CMbCLHBxRtmQIiciNwl9zePKt3yNgvJXjP7z2alkAfIUjvzqUhKIKLrzEpUCIAcJGbazrMuDh1byXkX2anH5ofm3$ >,
a job that computes a set of easily interpretable diagnostics to identify
orientation bias and anisotropic signal content in 3D refinement results.
- Other updates include: Non-uniform Refinement is now ~2x faster,
3DFlex supports CTF aberrations during reconstruction, new symmetry
relaxation tools for pseudo-symmetry, float16 support, AFIS beam shift
import and clustering, bundled CUDA toolkit, and much more!
For the full changelog, please see: https://urldefense.com/v3/__https://cryosparc.com/updates__;!!Mih3wA!CMbCLHBxRtmQIiciNwl9zePKt3yNgvJXjP7z2alkAfIUjvzqUhKIKLrzEpUCIAcJGbazrMuDh1byXkX2at3e3kmp$
Thank you!
The CryoSPARC Team
Structura Biotechnology Inc.
cryosparc.com
structura.bio
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