[3dem] EM Image processing

[Ludtke, Steven J.]

Its been called to my attention that the https link for eman2.org<https://urldefense.proofpoint.com/v2/url?u=http-3A__eman2.org&d=DwIFAg&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=QgOGzDsX582VVaKhhEb5qN1SpApuP-lZTRM8ZLYMoRPLlKxqC-sWIj7JUoAmY5sR&s=BcJ0NnTcdUXjBRj34OKRldagCVvbHeJ0FH60r3AX5oo&e= > seems to be broken at the moment. Both addresses should be fine with http: or here are the direct links:

https://urldefense.proofpoint.com/v2/url?u=https-3A__blake.bcm.edu_emanwiki_EMAN2_&d=DwIFAg&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=QgOGzDsX582VVaKhhEb5qN1SpApuP-lZTRM8ZLYMoRPLlKxqC-sWIj7JUoAmY5sR&s=AteG0tSoom8YKukj6_V4itZUBQRNG9OSLMSO8UFpjFI&e= 
https://urldefense.proofpoint.com/v2/url?u=https-3A__blake.bcm.edu_emanwiki_EMAN2_Programs_e2filtertool&d=DwIFAg&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=QgOGzDsX582VVaKhhEb5qN1SpApuP-lZTRM8ZLYMoRPLlKxqC-sWIj7JUoAmY5sR&s=8yWzZ9LrhktjQFihHs8zFS7VXUi2kfmn3OI2uxc_zN4&e= 

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Steven Ludtke, Ph.D. <sludtke at bcm.edu<mailto:sludtke at bcm.edu>>                      Baylor College of Medicine
Charles C. Bell Jr., Professor of Structural Biology
Dept. of Biochemistry and Molecular Biology                      (https://urldefense.proofpoint.com/v2/url?u=http-3A__www.bcm.edu_biochem&d=DwIFAg&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=QgOGzDsX582VVaKhhEb5qN1SpApuP-lZTRM8ZLYMoRPLlKxqC-sWIj7JUoAmY5sR&s=O2SdoE4seda4rmK0RJaAt8KMEv8wseBCc_T7A8I1U8A&e= <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.bcm.edu_biochem&d=DwIFAg&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=QgOGzDsX582VVaKhhEb5qN1SpApuP-lZTRM8ZLYMoRPLlKxqC-sWIj7JUoAmY5sR&s=O2SdoE4seda4rmK0RJaAt8KMEv8wseBCc_T7A8I1U8A&e= >)
Academic Director, CryoEM Core                                        (cryoem.bcm.edu<https://urldefense.proofpoint.com/v2/url?u=http-3A__cryoem.bcm.edu&d=DwIFAg&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=QgOGzDsX582VVaKhhEb5qN1SpApuP-lZTRM8ZLYMoRPLlKxqC-sWIj7JUoAmY5sR&s=IKY_EKlR_NN5HQRRnjiXRFSQeXpDdeGhjli5uboGYnU&e= >)
Co-Director CIBR Center                                    (https://urldefense.proofpoint.com/v2/url?u=http-3A__www.bcm.edu_research_cibr&d=DwIFAg&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=QgOGzDsX582VVaKhhEb5qN1SpApuP-lZTRM8ZLYMoRPLlKxqC-sWIj7JUoAmY5sR&s=lMOb5nHmEQpAJGOtaTfL_r3ffQ2yd1W9KSQz46o4XIQ&e= <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.bcm.edu_research_cibr&d=DwIFAg&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=QgOGzDsX582VVaKhhEb5qN1SpApuP-lZTRM8ZLYMoRPLlKxqC-sWIj7JUoAmY5sR&s=lMOb5nHmEQpAJGOtaTfL_r3ffQ2yd1W9KSQz46o4XIQ&e= >)




On Jan 31, 2022, at 12:21 PM, Ludtke, Steven J. <sludtke at bcm.edu<mailto:sludtke at bcm.edu>> wrote:

Hi Wu,
EMAN2 (https://urldefense.proofpoint.com/v2/url?u=https-3A__eman2.org&d=DwIFAg&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=QgOGzDsX582VVaKhhEb5qN1SpApuP-lZTRM8ZLYMoRPLlKxqC-sWIj7JUoAmY5sR&s=DtvcRGz9EVfsGN4GKmi_K1JOvoO5o39XosmjIvBF4Ak&e= <https://urldefense.proofpoint.com/v2/url?u=https-3A__eman2.org_&d=DwIFAg&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=QgOGzDsX582VVaKhhEb5qN1SpApuP-lZTRM8ZLYMoRPLlKxqC-sWIj7JUoAmY5sR&s=0oseEn20qxbGoLAgZ_1HMKs5ozBkV5ffHUzBtxs0W0g&e= >) includes options for installing on Windows machines, though we prefer the WSL2 approach, there are native binaries as well, which can be used for standard EM image processing operations. See also

https://urldefense.proofpoint.com/v2/url?u=https-3A__eman2.org_Programs_e2filtertool&d=DwIFAg&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=QgOGzDsX582VVaKhhEb5qN1SpApuP-lZTRM8ZLYMoRPLlKxqC-sWIj7JUoAmY5sR&s=Obb8O679SewxYF_pP1dURUd2oZmj8SG4s_Cz_TVB0B0&e= 


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Steven Ludtke, Ph.D. <sludtke at bcm.edu<mailto:sludtke at bcm.edu>>                      Baylor College of Medicine
Charles C. Bell Jr., Professor of Structural Biology
Dept. of Biochemistry and Molecular Biology                      (https://urldefense.proofpoint.com/v2/url?u=http-3A__www.bcm.edu_biochem&d=DwIFAg&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=QgOGzDsX582VVaKhhEb5qN1SpApuP-lZTRM8ZLYMoRPLlKxqC-sWIj7JUoAmY5sR&s=O2SdoE4seda4rmK0RJaAt8KMEv8wseBCc_T7A8I1U8A&e= <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.bcm.edu_biochem&d=DwIFAg&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=QgOGzDsX582VVaKhhEb5qN1SpApuP-lZTRM8ZLYMoRPLlKxqC-sWIj7JUoAmY5sR&s=O2SdoE4seda4rmK0RJaAt8KMEv8wseBCc_T7A8I1U8A&e= >)
Academic Director, CryoEM Core                                        (cryoem.bcm.edu<https://urldefense.proofpoint.com/v2/url?u=http-3A__cryoem.bcm.edu_&d=DwIFAg&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=QgOGzDsX582VVaKhhEb5qN1SpApuP-lZTRM8ZLYMoRPLlKxqC-sWIj7JUoAmY5sR&s=FkGsyZkREc_y5SErg2NaMVsmAwf9aCcZAS75A5PqcNo&e= >)
Co-Director CIBR Center                                    (https://urldefense.proofpoint.com/v2/url?u=http-3A__www.bcm.edu_research_cibr&d=DwIFAg&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=QgOGzDsX582VVaKhhEb5qN1SpApuP-lZTRM8ZLYMoRPLlKxqC-sWIj7JUoAmY5sR&s=lMOb5nHmEQpAJGOtaTfL_r3ffQ2yd1W9KSQz46o4XIQ&e= <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.bcm.edu_research_cibr&d=DwIFAg&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=QgOGzDsX582VVaKhhEb5qN1SpApuP-lZTRM8ZLYMoRPLlKxqC-sWIj7JUoAmY5sR&s=lMOb5nHmEQpAJGOtaTfL_r3ffQ2yd1W9KSQz46o4XIQ&e= >)




On Jan 31, 2022, at 12:13 PM, Wu, Xiao Chu <xiw138 at mail.usask.ca<mailto:xiw138 at mail.usask.ca>> wrote:

***CAUTION:*** This email is not from a BCM Source. Only click links or open attachments you know are safe.
________________________________

Dear All,

I have some TEM small particle images that need software process to make them more clear to see the detail. I know that SPIDER can do this process, but we are not able to install this software on a windows computer. Any one knows any other software that similar to SPIDER which can be installed on windows computer to process the TEM small particle images.

Thanks
Wu
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