[3dem] Total variation in ET reconstruction(?)
Johannes Haataja
johannes.haataja at aalto.fi
Fri Sep 2 01:16:19 PDT 2016
Dear all,
thank you for the helpful links & resources. In addition to SNARK14,
two other software packages, that also include TV, were pointed out
"Compressed Sensing Electron Tomography for Determining Biological
Structure", Guay et al.
http://dx.doi.org/10.1038/srep27614
https://github.com/norbert-wiener-center/cset
"ICON: 3D reconstruction with ‘missing-information’ restoration in
biological electron tomography."
Deng et al.
http://dx.doi.org/10.1016/j.jsb.2016.04.004.
http://feilab.ibp.ac.cn/LBEMSB/ICON.html
My best,
- J.
on to, 2016-09-01 at 11:31 +0000, Gabor Herman wrote:
> The software package SNARK14 is freely available from
> http://www.dig.cs.gc.cuny.edu/software/snark14/
> and has total variation (TV) incorporated in it.
>
> Gabor T. Herman, Ph.D.
> Distinguished Professor of Computer Science
> The Graduate Center of the City University of New York
> www.dig.cs.gc.cuny.edu/~gabor/index.html
> .
> ==========================================
> .
> ANNOUNCEMENTS
>
> .
> Inverse Problems has an upcoming special issue entitled Special issue on superiorization: theory and applications.
> The closing date for submissions is 30 April 2016.
> \http://iopscience.iop.org/journal/0266-5611/page/Special-issue-superiorization-theory-and-applications
>
> .
> SNARK14 (a programming system for the reconstruction of 2D images from 1D projections)
> http://www.dig.cs.gc.cuny.edu/software/snark14/
>
> .
> How I became an object of slander by Pamela Geller, Ron Torossian and their Ilk
> http://www.dig.cs.gc.cuny.edu/~gabor/How_with_revised_links.pdf
>
> --------------------------------------------
> On Thu, 9/1/16, Johannes Haataja <johannes.haataja at aalto.fi> wrote:
>
> Subject: [3dem] Total variation in ET reconstruction(?)
> To: "3dem at ncmir.ucsd.edu" <3dem at ncmir.ucsd.edu>
> Date: Thursday, September 1, 2016, 6:04 AM
>
> Dear all,
> does anyone know if any of the freely
> available ET software packages
> include total variation (TV)/compressive sensing
> reconstruction scheme?
> I would prefer to use existing one instead of implementing
> one myself...
>
> My best,
> J. Haataja
>
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