EM Search/Deposition toolbar
emdep
emdep at ebi.ac.uk
Wed Feb 9 03:25:28 PST 2005
Dear Colleagues,
The toolbar described below provides an easily accessible route to
the EMsearch, EM Atlas pages and EMdep facilities available at the EBI
(as well as access to the PDB and other databases, cf below).
Richard Newman
MSD Group, EBI
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Biobar - A mozilla/firefox search toolbar for bioinformatics
HomePage: http://biobar.mozdev.org
Biobar is a power browsing mozilla/firefox toolbar for searching
biological databases. The toolbar installs seamlessly on
firefox(0.8-1.0+), mozilla (1.4-1.8+) and netscape 7.0 browsers on all
operating systems. The toolbar allows a biologist to browse and retrieve
data from Genomic, Proteomic, Functional, Literature, Taxonomic,
Structural, Plant and Animal-specific databases right from the browser.
The current version of biobar (1.2.3) allows searching from the following
sources:
Data Collections: EBI, NCBI and DDBJ
Sequence: EMBL, Ensembl, UniProt, Glovar, ASD, InterPro, Integr8, Pfam,
ExPASy
Structure: MSD, RCSB, PDBJ, NDB, OCA, PDBSum, EDS, CATH, SCOP, EMDB
Function: GO, Reactome, IntAct, BioCyc, aMAZE, KEGG
Plant: Gramene, MaizeGDB
Animal: Yeast Genome Database (SGD), Flybase, Wormbase, Rat Genome
Database (RDG), Mouse Genome Informatics (MGD) and Zebrafish Information
Network (ZFIN)
Installation:
http://biobar.mozdev.org/installation.html
The main menu provides easy links to many bioinformatics services
including sequence, structural and analysis tools. The menu also contains
links to major data deposition sites for sequence and structural data. An
Options menu can be used to configure a default search database, sets of
databases to show on the toolbar and also choose mirrors sites for some
databases.
Jawahar Swaminathan, Ph.D.
Macromolecular Structure Database
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The EMD at EBI
Macromolecular Structure Database
EMBL Outstation Hinxton +44 (0) 1223 494444 switchboard
European Bioinformatics Institute +44 (0) 1223 494487 fax
Wellcome Trust Genome Campus 494689 msd
Hinxton emdep at ebi.ac.uk
Cambridge CB10 1SD UK
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