[3dem] Paper Published on CryoEM Archiving and Validation Recommendations

Justin Flatt justin at rcsb.rutgers.edu
Wed Mar 13 10:38:46 PDT 2024


A workshop was held at EMBL-EBI (Hinxton, UK) in January 2020 to discuss 
data requirements for deposition and validation of cryoEM structures, 
with a focus on single-particle analysis and setting community 
recommendations. The outcomes of this meeting have now been published in 
this manuscript which highlights the recent achievements made by the 
wwPDB in the space of 3DEM validation and the community recommendations 
going forward. Some of these recommendations have already been 
implemented, such as a three-tiered strategy powered by the Validation 
Analysis (VA) pipeline for the dissemination of validation information 
and ensuring the that VA can be run by external applications.

> Community recommendations on cryoEM data archiving and validation
> Gerard J. Kleywegt, Paul D. Adams, Sarah J. Butcher, Cathy Lawson, 
> Alexis Rohou, Peter B. Rosenthal, Sriram Subramaniam, Maya Topf, Sanja 
> Abbott, Philip R. Baldwin, John M. Berrisford, Gérard Bricogne, Preeti 
> Choudhary, Tristan I. Croll, Radostin Danev, Sai J. Ganesan, Timothy 
> Grant, Aleksandras Gutmanas, Richard Henderson, J. Bernard Heymann, 
> Juha T. Huiskonen, Andrei Istrate, Takayuki Kato, Gabriel C. Lander, 
> Shee-Mei Lok, Steven J. Ludtke, Garib N. Murshudov, Ryan Pye, Grigore 
> D. Pintilie, Jane S. Richardson, Carsten Sachse, Osman Salih, Sjors 
> H.W. Scheres, Gunnar F. Schroeder, Carlos Oscar S. Sorzano, Scott M. 
> Stagg, Zhe Wang, Rangana Warshamanage, John D. Westbrook, Martyn D. 
> Winn, Jasmine Y. Young, Stephen K. Burley, Jeffrey C. Hoch, Genji 
> Kurisu, Kyle Morris, Ardan Patwardhan, Sameer Velankar
> (2024) _IUCrJ_ 11: 140-151 https://urldefense.com/v3/__https://doi.org/10.1107/S2052252524001246__;!!Mih3wA!FQNqiA6M86-qGaycNCUA-JoPiaKOyxwVbL25V6uTgibMuWolvqEaKTMSppvuVSezD06_Wfq4sdpOawvqPs8LHqsS$ 

  [1]


Links:
------
[1] https://urldefense.com/v3/__https://doi.org/10.1107/S2052252524001246__;!!Mih3wA!FQNqiA6M86-qGaycNCUA-JoPiaKOyxwVbL25V6uTgibMuWolvqEaKTMSppvuVSezD06_Wfq4sdpOawvqPs8LHqsS$ 
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ncmir.ucsd.edu/pipermail/3dem/attachments/20240313/8be34038/attachment-0001.html>


More information about the 3dem mailing list