[3dem] Preprint Published on NextGen Archive

[Justin Flatt]

A new paper describes how the recently-announced NextGen Archive [2] 
provides centralized access to integrated annotations and enriched 
structural information for PDB data:

> NextGen Archive: Centralising Access to Integrated Annotations and 
> Enriched Structural Information by the Worldwide Protein Data Bank
> Preeti Choudhary, Zukang Feng, John Berrisford, Henry Chao, Yasuyo 
> Ikegawa, Ezra Peisach, Dennis W. Piehl, James Smith, Ahsan Tanweer, 
> Mihaly Varadi, John D. Westbrook, Jasmine Y. Young, Ardan Patwardhan, 
> Kyle L. Morris, Jeffrey C. Hoch, Genji Kurisu, Sameer Velankar, Stephen 
> K. Burley
> (2023) _bioRxiv_ doi: 10.1101/2023.10.24.563739 [1]

The PDB NextGen archive [3] provides sequence annotation from external 
resources such as UniProt, SCOP2 and Pfam in addition to the content 
provided in the structure model files in the PDB main archive. The 
inclusion of UniProtKB numbering facilitates effortless structural 
comparisons between experimental and predicted protein models. These 
PDBx/mmCIF files are directly compatible with various data visualization 
tools, simplifying the display of annotations on 3D structure views.

Links:
------
[1] https://urldefense.com/v3/__https://doi.org/10.1101/2023.10.24.563739__;!!Mih3wA!GsD5mvMSewrySQ1-4s6JDtay6pNq9DcfKnAl8uQkqOm1tJwfgnwiR0Fq66GrEAH8VvkSu4BcMXpNrPzsjKEQJ5nR$ 
[2] https://urldefense.com/v3/__https://www.wwpdb.org/news/news?year=2023*63cedad9b5f08ee94ab73826__;Iw!!Mih3wA!GsD5mvMSewrySQ1-4s6JDtay6pNq9DcfKnAl8uQkqOm1tJwfgnwiR0Fq66GrEAH8VvkSu4BcMXpNrPzsjB8ezTYU$ 
[3] https://urldefense.com/v3/__https://www.wwpdb.org/ftp/pdb-nextgen-archive-site__;!!Mih3wA!GsD5mvMSewrySQ1-4s6JDtay6pNq9DcfKnAl8uQkqOm1tJwfgnwiR0Fq66GrEAH8VvkSu4BcMXpNrPzsjMSGlyuW$ 
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ncmir.ucsd.edu/pipermail/3dem/attachments/20240130/82b467b7/attachment.html>