[3dem] Time-stamped Copies of PDB and EMDB Archives

[Justin Flatt]

A snapshot of the PDB Core archive (https://urldefense.com/v3/__ftp://ftp.wwpdb.org__;!!Mih3wA!HROI6L2s27XNL9pphncrTRUWvlvgx4cHlpkDf5EvalXwYg1CARzyIj4Y8g6bf1Of3IAFbXDTO5VlRNXe0jxMVytS$ , 
https://urldefense.com/v3/__https://s3.rcsb.org__;!!Mih3wA!HROI6L2s27XNL9pphncrTRUWvlvgx4cHlpkDf5EvalXwYg1CARzyIj4Y8g6bf1Of3IAFbXDTO5VlRNXe0hKUDYQ4$ ) as of January 2, 2024 has been added to 
https://urldefense.com/v3/__ftp://snapshots.wwpdb.org__;!!Mih3wA!HROI6L2s27XNL9pphncrTRUWvlvgx4cHlpkDf5EvalXwYg1CARzyIj4Y8g6bf1Of3IAFbXDTO5VlRNXe0hvSEUVO$ , https://urldefense.com/v3/__https://s3snapshots.rcsb.org__;!!Mih3wA!HROI6L2s27XNL9pphncrTRUWvlvgx4cHlpkDf5EvalXwYg1CARzyIj4Y8g6bf1Of3IAFbXDTO5VlRNXe0nSdZZxd$  (AWS), and 
https://urldefense.com/v3/__ftp://snapshots.pdbj.org__;!!Mih3wA!HROI6L2s27XNL9pphncrTRUWvlvgx4cHlpkDf5EvalXwYg1CARzyIj4Y8g6bf1Of3IAFbXDTO5VlRNXe0gSmvR3O$ . Snapshots have been archived annually since 
2005 to provide readily identifiable data sets for research on the PDB 
archive.

The directory 20240101 includes the 214,121 experimentally-determined 
structure and experimental data available at that time. Atomic 
coordinate and related metadata are available in PDBx/mmCIF, PDB, and 
XML file formats. The date and time stamp of each file indicates the 
last time the file was modified. The snapshot of PDB Core Archive is 
1,242 GB.

A snapshot of the EMDB Core archive 
(https://urldefense.com/v3/__ftp://ftp.ebi.ac.uk/pub/databases/emdb/__;!!Mih3wA!HROI6L2s27XNL9pphncrTRUWvlvgx4cHlpkDf5EvalXwYg1CARzyIj4Y8g6bf1Of3IAFbXDTO5VlRNXe0kytsswG$ ) as of January 01, 2024 can be 
found in https://urldefense.com/v3/__ftp://ftp.ebi.ac.uk/pub/databases/emdb_vault/20240101/__;!!Mih3wA!HROI6L2s27XNL9pphncrTRUWvlvgx4cHlpkDf5EvalXwYg1CARzyIj4Y8g6bf1Of3IAFbXDTO5VlRNXe0iNQ882G$  and 
https://urldefense.com/v3/__ftp://snapshots.pdbj.org/20240101/__;!!Mih3wA!HROI6L2s27XNL9pphncrTRUWvlvgx4cHlpkDf5EvalXwYg1CARzyIj4Y8g6bf1Of3IAFbXDTO5VlRNXe0jT_WdiT$ . The snapshot of EMDB Core Archive 
contains map files and their metadata within XML files for both released 
and obsoleted entries (32,033 and 282, respectively) and is 14 TB in 
size.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ncmir.ucsd.edu/pipermail/3dem/attachments/20240104/f184da21/attachment.html>