[3dem] Converting cryolo tomogram particle coordinates to Relion4/5 friendly ones

Willem Noteborn willemnoteborn at outlook.com
Thu Feb 29 10:43:58 PST 2024


Dear list,

I was wondering if anyone knows a way to convert cryolo picked tomogram coordinates (for instance the CBOX_3D or coords format) to a format that can be readily imported into Relion. I've been playing around with cryolo_boxmanager_tools.py but can't seem to find a solution. Maybe I'm missing something obvious.

Any information on this would be highly appreciated!

Kind regards,
Willem

Dr. Willem Noteborn
CryoEM Scientist

T: +31 (0)7 1527 1424
w.e.m.noteborn at biology.leidenuniv.nl
NeCEN at biology.leidenuniv.nl
https://urldefense.com/v3/__http://www.NeCEN.nl__;!!Mih3wA!EZuage2pQokgJSH-i-JxI2i7DjK_QeRYVEWfI5sx2nh5hsrUkIg2nCI-JMcJHzkooSW_IoEeWqN0fpGQodQb_f5QHp2U$ <https://urldefense.com/v3/__http://www.NeCEN.nl__;!!Mih3wA!EZuage2pQokgJSH-i-JxI2i7DjK_QeRYVEWfI5sx2nh5hsrUkIg2nCI-JMcJHzkooSW_IoEeWqN0fpGQodQb_f5QHp2U$ >

[https://urldefense.com/v3/__https://s-install.avcdn.net/ipm/preview/icons/icon-envelope-tick-green-avg-v1.png__;!!Mih3wA!EZuage2pQokgJSH-i-JxI2i7DjK_QeRYVEWfI5sx2nh5hsrUkIg2nCI-JMcJHzkooSW_IoEeWqN0fpGQodQb_T3e_GUZ$ ]<https://urldefense.com/v3/__http://www.avg.com/email-signature?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail__;!!Mih3wA!EZuage2pQokgJSH-i-JxI2i7DjK_QeRYVEWfI5sx2nh5hsrUkIg2nCI-JMcJHzkooSW_IoEeWqN0fpGQodQb_R_5zw26$ >     Virusvrij.https://urldefense.com/v3/__http://www.avg.com__;!!Mih3wA!EZuage2pQokgJSH-i-JxI2i7DjK_QeRYVEWfI5sx2nh5hsrUkIg2nCI-JMcJHzkooSW_IoEeWqN0fpGQodQb_SUxU15M$ <https://urldefense.com/v3/__http://www.avg.com/email-signature?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail__;!!Mih3wA!EZuage2pQokgJSH-i-JxI2i7DjK_QeRYVEWfI5sx2nh5hsrUkIg2nCI-JMcJHzkooSW_IoEeWqN0fpGQodQb_R_5zw26$ >
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ncmir.ucsd.edu/pipermail/3dem/attachments/20240229/ee78346b/attachment.html>


More information about the 3dem mailing list