[3dem] determine spherically averaged radial density

[Carlos Oscar Sorzano]

Same here, I am afraid you would need to update the Xmipp if you still 
want to use it.

Kind regards, Carlos Oscar

El 09/04/2024 a las 14:39, Dieter Blaas escribió:
>
> Dear Tom and Steven,
>
>    thanks for the quick answer! But I also need to install the entire 
> Eman2 package for it work?
>
> Best, Dieter
>
> ------------------------------------------------------------------------
> Dieter Blaas,
> Max Perutz Laboratories
> Medical University of Vienna,
> Inst. Med. Biochem., Vienna Biocenter (VBC),
> Dr. Bohr Gasse 9/3,
> A-1030 Vienna, Austria,
> Tel: 0043 1 4277 61630,
> Mobile: 0043 699 1942 1659
> e-mail:dieter.blaas at meduniwien.ac.at
> ------------------------------------------------------------------------
> On 09.04.2024 13:47, Ludtke, Steven J. wrote:
>> To add, if your goal is to compute the radial density distribution as 
>> a curve rather than the averaged volume,
>> e2proc3d.py  --calcradial 0 map.mrc radial.txt
>> (can also calculate min,max)
>>
>> e2proc3d.py  --help
>>
>> ---
>> Steven Ludtke, Ph.D. <sludtke at bcm.edu>                      Baylor 
>> College of Medicine
>> Charles C. Bell Jr., Professor of Structural Biology        Dept. of 
>> Biochemistry
>> Deputy Director, Advanced Technology Cores                  and 
>> Molecular Pharmacology
>> Academic Director, CryoEM Core
>> Co-Director CIBR Center
>>
>>
>>> On Apr 9, 2024, at 5:34 AM, Tom Calcraft <tom.calcraft at crick.ac.uk> 
>>> wrote:
>>>
>>> Hi Dieter,
>>>
>>> The math.rotationalaverage function in EMAN2’s e2proc3d.py should do 
>>> what you are looking for:
>>>
>>> e2proc3d.py --process=math.rotationalaverage input.mrc output.mrc
>>>
>>> Best,
>>> Tom
>>>
>>>> On 9 Apr 2024, at 10:33, Dieter Blaas 
>>>> <dieter.blaas at meduniwien.ac.at> wrote:
>>>>
>>>>
>>>> External Sender: Use caution.
>>>>
>>>>
>>>> Dear all,
>>>>
>>>>  we need to determine the spherically averaged radial density of a
>>>> symmetric virus. Long ago, we used for this xmipp_operate but my old
>>>> scipion3 and xmipp installs do not work any more. Is there any other
>>>> piece of software that can easily do this without too much ado?
>>>>
>>>> Thanks for hints, Dieter
>>>>
>>>> ------------------------------------------------------------------------
>>>> Dieter Blaas,
>>>> Max Perutz Laboratories
>>>> Medical University of Vienna,
>>>> Inst. Med. Biochem., Vienna Biocenter (VBC),
>>>> Dr. Bohr Gasse 9/3,
>>>> A-1030 Vienna, Austria,
>>>> Tel: 0043 1 4277 61630,
>>>> Mobile: 0043 699 1942 1659
>>>> e-mail: dieter.blaas at meduniwien.ac.at
>>>> ------------------------------------------------------------------------
>>>>
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