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<p>Same here, I am afraid you would need to update the Xmipp if you
still want to use it.</p>
<p>Kind regards, Carlos Oscar<br>
</p>
<div class="moz-cite-prefix">El 09/04/2024 a las 14:39, Dieter Blaas
escribió:<br>
</div>
<blockquote type="cite"
cite="mid:480d7436-4ffd-403f-93af-fcdd89be783d@meduniwien.ac.at">
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<p>Dear Tom and Steven,</p>
<p> thanks for the quick answer! But I also need to install the
entire Eman2 package for it work?</p>
<p>Best, Dieter<br>
</p>
<pre class="moz-signature" cols="72">------------------------------------------------------------------------
Dieter Blaas,
Max Perutz Laboratories
Medical University of Vienna,
Inst. Med. Biochem., Vienna Biocenter (VBC),
Dr. Bohr Gasse 9/3,
A-1030 Vienna, Austria,
Tel: 0043 1 4277 61630,
Mobile: 0043 699 1942 1659
e-mail: <a class="moz-txt-link-abbreviated moz-txt-link-freetext"
href="mailto:dieter.blaas@meduniwien.ac.at" moz-do-not-send="true">dieter.blaas@meduniwien.ac.at</a>
------------------------------------------------------------------------</pre>
<div class="moz-cite-prefix">On 09.04.2024 13:47, Ludtke, Steven
J. wrote:<br>
</div>
<blockquote type="cite"
cite="mid:1B30EBF5-7E32-4B80-BA3A-97732AFE8F92@bcm.edu">
<meta http-equiv="Content-Type"
content="text/html; charset=UTF-8">
To add, if your goal is to compute the radial density
distribution as a curve rather than the averaged volume,
<div>e2proc3d.py --calcradial 0 map.mrc radial.txt</div>
<div>(can also calculate min,max)</div>
<div><br>
</div>
<div>e2proc3d.py --help</div>
<div><br id="lineBreakAtBeginningOfMessage">
<div>
<div dir="auto"
style="text-align: start; text-indent: 0px; overflow-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;">
<div dir="auto"
style="text-align: start; text-indent: 0px; overflow-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;">
<div dir="auto"
style="text-align: start; text-indent: 0px; overflow-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;">
<div dir="auto"
style="text-align: start; text-indent: 0px; overflow-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;">
<div dir="auto"
style="text-align: start; text-indent: 0px; overflow-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;">
<div dir="auto"
style="text-align: start; text-indent: 0px; overflow-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;">
<div><font face="Courier New"><span
style="font-size: 14px;">---</span></font></div>
<div><font face="Courier New"><span
style="font-size: 14px;">Steven Ludtke,
Ph.D. <a class="moz-txt-link-rfc2396E"
href="mailto:sludtke@bcm.edu"
moz-do-not-send="true"><sludtke@bcm.edu></a> Baylor
College of Medicine<br>
Charles C. Bell Jr., Professor of
Structural Biology Dept. of
Biochemistry <br>
Deputy Director, Advanced
Technology Cores and
Molecular Pharmacology<br>
Academic Director, CryoEM Core<br>
Co-Director CIBR Center<br>
</span></font><br>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
<div><br>
<blockquote type="cite">
<div>On Apr 9, 2024, at 5:34 AM, Tom Calcraft <a
class="moz-txt-link-rfc2396E"
href="mailto:tom.calcraft@crick.ac.uk"
moz-do-not-send="true"><tom.calcraft@crick.ac.uk></a>
wrote:</div>
<br class="Apple-interchange-newline">
<div><span
style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; float: none; display: inline !important;">Hi
Dieter,</span><br
style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<br
style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<span
style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; float: none; display: inline !important;">The
math.rotationalaverage function in EMAN2’s e2proc3d.py
should do what you are looking for:</span><br
style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<br
style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<span
style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; float: none; display: inline !important;">e2proc3d.py
--process=math.rotationalaverage input.mrc output.mrc</span><br
style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<br
style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<span
style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; float: none; display: inline !important;">Best,</span><br
style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<span
style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none; float: none; display: inline !important;">Tom</span><br
style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<br
style="caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
<blockquote type="cite"
style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: 400; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;">
On 9 Apr 2024, at 10:33, Dieter Blaas <<a
href="mailto:dieter.blaas@meduniwien.ac.at"
moz-do-not-send="true" class="moz-txt-link-freetext">dieter.blaas@meduniwien.ac.at</a>>
wrote:<br>
<br>
<br>
External Sender: Use caution.<br>
<br>
<br>
Dear all,<br>
<br>
we need to determine the spherically averaged radial
density of a<br>
symmetric virus. Long ago, we used for this
xmipp_operate but my old<br>
scipion3 and xmipp installs do not work any more. Is
there any other<br>
piece of software that can easily do this without too
much ado?<br>
<br>
Thanks for hints, Dieter<br>
<br>
------------------------------------------------------------------------<br>
Dieter Blaas,<br>
Max Perutz Laboratories<br>
Medical University of Vienna,<br>
Inst. Med. Biochem., Vienna Biocenter (VBC),<br>
Dr. Bohr Gasse 9/3,<br>
A-1030 Vienna, Austria,<br>
Tel: 0043 1 4277 61630,<br>
Mobile: 0043 699 1942 1659<br>
e-mail: <a
class="moz-txt-link-abbreviated moz-txt-link-freetext"
href="mailto:dieter.blaas@meduniwien.ac.at"
moz-do-not-send="true">dieter.blaas@meduniwien.ac.at</a><br>
------------------------------------------------------------------------<br>
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