[3dem] double spaces in relion star files...

[Takanori Nakane]

Hi,

 > empty values should be quoted as ""

This is correct but third party scripts/programs do not necessarily support quotation.

I would avoid storing empty values in particle STAR files if ever possible.

Best regards,

Takanori Nakane

On 2021/08/12 1:57, Grigory Sharov wrote:
> Hi Pablo,
> 
> empty values should be quoted as ""
> 
> Best regards,
> Grigory
> 
> --------------------------------------------------------------------------------
> Grigory Sharov, Ph.D.
> 
> MRC Laboratory of Molecular Biology,
> Francis Crick Avenue,
> Cambridge Biomedical Campus,
> Cambridge CB2 0QH, UK.
> tel. +44 (0) 1223 267228 <tel:+44%201223%20267228>
> e-mail: gsharov at mrc-lmb.cam.ac.uk <mailto:gsharov at mrc-lmb.cam.ac.uk>
> 
> 
> On Wed, Aug 11, 2021 at 5:55 PM Pablo Conesa <pconesa at cnb.csic.es <mailto:pconesa at cnb.csic.es>> wrote:
> 
>     Just found other examples ofr star files and they have several spaces as separator:
> 
>                 0     0.001001   999.000000     1.000000 1.000000     1.000000     1.000000     1.000000
> 
> 
>     So I guess what I reported before is not a valid way of specifying an empty value.
> 
> 
>     On 11/8/21 18:45, Pablo Conesa wrote:
>>
>>     Dear all, developers.
>>
>>     I've found a starfile with this kind of lines:
>>
>>     000001 at J97/imported/mic_000002.mrcs <mailto:000001 at J97/imported/mic_000002.mrcs> 0.000000 180.000000  0.000000 ...
>>
>>
>>     Note that there are *2 non obvious spaces after 180.000000*!!
>>
>>     So, are the 2 spaces enclosing a "value" (empty in this case) ?
>>
>>     Sorry if it is written somewhere. I've looked here: https://urldefense.proofpoint.com/v2/url?u=https-3A__relion.readthedocs.io_en_latest_Reference_Conventions.html-23star-2Dformat&d=DwIDaQ&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=72I4RJqym8Ztz-Lf56GJyol4z3ursHdC_qK3-rF-9Jk&s=8Athtcsge6FUBfunP_NA2OisnkIvR3DUGHKmmTt0Qug&e= 
>>     <https://urldefense.proofpoint.com/v2/url?u=https-3A__relion.readthedocs.io_en_latest_Reference_Conventions.html-23star-2Dformat&d=DwMDaQ&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=Ej1d8bc3GyHeMSsgSWSRX1xyv9oQv2-Stoq5XbD7KJI&s=TemXzWj2LmNAHm1WkS74BohfSFyPNamjG3nSPdF9Ick&e=>
>>
>>
>>     -- 
>>     Pablo Conesa - *Madrid Scipion
>>     <https://urldefense.proofpoint.com/v2/url?u=http-3A__scipion.i2pc.es&d=DwMDaQ&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=Ej1d8bc3GyHeMSsgSWSRX1xyv9oQv2-Stoq5XbD7KJI&s=9SR7D8gpz3I5A8tObQncaptWoIhUoPX88UkxDsuqHKs&e=>
>>     team*
>>
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>     -- 
>     Pablo Conesa - *Madrid Scipion
>     <https://urldefense.proofpoint.com/v2/url?u=http-3A__scipion.i2pc.es&d=DwMDaQ&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=ZFbG4d69tygk7gLrd147MpnPivQr34LFv6AIr1wBGIM&s=GxSipGdQH2QkIdMG_VzPeCcsXqZKWHCk672NLvpA904&e=>
>     team*
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