[3dem] double spaces in relion star files...

[Grigory Sharov]

Hi Pablo,

empty values should be quoted as ""

Best regards,
Grigory

--------------------------------------------------------------------------------
Grigory Sharov, Ph.D.

MRC Laboratory of Molecular Biology,
Francis Crick Avenue,
Cambridge Biomedical Campus,
Cambridge CB2 0QH, UK.
tel. +44 (0) 1223 267228 <+44%201223%20267228>
e-mail: gsharov at mrc-lmb.cam.ac.uk


On Wed, Aug 11, 2021 at 5:55 PM Pablo Conesa <pconesa at cnb.csic.es> wrote:

> Just found other examples ofr star files and they have several spaces as
> separator:
>
>            0     0.001001   999.000000     1.000000     1.000000
> 1.000000     1.000000     1.000000
>
>
> So I guess what I reported before is not a valid way of specifying an
> empty value.
>
>
> On 11/8/21 18:45, Pablo Conesa wrote:
>
> Dear all, developers.
>
> I've found a starfile with this kind of lines:
>
> 000001 at J97/imported/mic_000002.mrcs 0.000000 180.000000  0.000000 ...
>
>
> Note that there are *2 non obvious spaces after 180.000000*!!
>
> So, are the 2 spaces enclosing a "value" (empty in this case) ?
>
> Sorry if it is written somewhere. I've looked here:
> https://urldefense.proofpoint.com/v2/url?u=https-3A__relion.readthedocs.io_en_latest_Reference_Conventions.html-23star-2Dformat&d=DwIFaQ&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=sZrelVKM9L9f96SDqGOVpaw8WINHcDyfit6TPpxJnQE&s=IwxWUkL1x168vSwougwYVE3uS2KhA3dD23_gEr2-jBc&e= 
> <https://urldefense.proofpoint.com/v2/url?u=https-3A__relion.readthedocs.io_en_latest_Reference_Conventions.html-23star-2Dformat&d=DwMDaQ&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=Ej1d8bc3GyHeMSsgSWSRX1xyv9oQv2-Stoq5XbD7KJI&s=TemXzWj2LmNAHm1WkS74BohfSFyPNamjG3nSPdF9Ick&e=>
>
>
> --
> Pablo Conesa - *Madrid Scipion
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__scipion.i2pc.es&d=DwMDaQ&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=Ej1d8bc3GyHeMSsgSWSRX1xyv9oQv2-Stoq5XbD7KJI&s=9SR7D8gpz3I5A8tObQncaptWoIhUoPX88UkxDsuqHKs&e=>
> team*
>
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> --
> Pablo Conesa - *Madrid Scipion
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__scipion.i2pc.es&d=DwMDaQ&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=ZFbG4d69tygk7gLrd147MpnPivQr34LFv6AIr1wBGIM&s=GxSipGdQH2QkIdMG_VzPeCcsXqZKWHCk672NLvpA904&e=>
> team*
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