[3dem] 3dem Digest, Vol 151, Issue 6
Benjamin Himes
himes.benjamin at gmail.com
Fri Mar 6 16:17:02 PST 2020
I'd like to echo Steve's question....i'm a co-author on last year's paper,
and haven't been able to read it. Really questioning the eurographics
model..
Nice idea, but the suppression of info is a prob.
Ben H.
On Thu, Mar 5, 2020, 5:07 PM <3dem-request at ncmir.ucsd.edu> wrote:
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> Today's Topics:
>
> 1. SHape REtrieval Contest (SHREC) 2020 track "Classification in
> Cryo-Electron Tomograms" (Friedrich F?rster)
> 2. Re: SHape REtrieval Contest (SHREC) 2020 track
> "Classification in Cryo-Electron Tomograms" (Ludtke, Steven J.)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Thu, 5 Mar 2020 21:32:58 +0100
> From: Friedrich F?rster <f.g.forster at uu.nl>
> To: 3dem at ncmir.ucsd.edu
> Subject: [3dem] SHape REtrieval Contest (SHREC) 2020 track
> "Classification in Cryo-Electron Tomograms"
> Message-ID:
> <
> CALtyCEivD7bbBX8d7+-ag7CMvPFyxVW5cDL7tJrr5h+1sRobDg at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Dear 3D-EM,
>
>
>
> We would like to announce SHape REtrieval Contest (SHREC) 2020 track
> "Classification in Cryo-Electron Tomograms". In this track, we propose a
> task of localization and classification of biological particles in the
> cryo-electron tomograms. We provide a dataset of simulated tomograms with
> annotations and additional ground truth information. We hope this will
> enable researchers to try out different methods, including machine learning
> approaches.
>
>
>
> Track participants will have 4 weeks to send us their results (text file
> with a list of found and classified particles, and one-page description of
> their method). Track results are evaluated, analyzed and combined into a
> joint paper, that will be submitted to and presented at 3D Object Retrieval
> Workshop, 4-5 September 2020: https://workshop.cgv.tugraz.at/3dor2020/
>
> The general objective of the SHREC is to evaluate the effectiveness and
> compare localization and classification methods.
>
>
>
> If you are interested, please check out the website for more information:
> http://www.shrec.net/cryo-et/
>
>
>
> Best regards
>
>
>
> Ilja Gubins, Gijs van der Schot, Marten Chaillet, Remco Veltkamp, Friedrich
> F?rster
>
> --
> prof. dr. Friedrich Foerster
>
> Bijvoet Center for Biomolecular Research
> Utrecht University
> Padualaan 8
> 3584 CH Utrecht
> The Netherlands
>
> Tel: +31 30 253 4318
>
> http://www.uu.nl/en/research/cryo-em
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> ------------------------------
>
> Message: 2
> Date: Thu, 5 Mar 2020 22:07:00 +0000
> From: "Ludtke, Steven J." <sludtke at bcm.edu>
> To: Friedrich F?rster <f.g.forster at uu.nl>
> Cc: "3dem at ncmir.ucsd.edu" <3dem at ncmir.ucsd.edu>
> Subject: Re: [3dem] SHape REtrieval Contest (SHREC) 2020 track
> "Classification in Cryo-Electron Tomograms"
> Message-ID: <2DA60190-8015-4883-8565-A96DDA1E7E05 at bcm.edu>
> Content-Type: text/plain; charset="utf-8"
>
> Hi Fredrich,
> were the results from the last one ever made publicly available? Is the
> data and/or results of the last one available online somewhere? I looked
> briefly, and could find websites mentioning it, but little else? Not much
> motivation to participate if the results are all closed (other than
> resulting publications, of course).
>
>
> --------------------------------------------------------------------------------------
> Steven Ludtke, Ph.D. <sludtke at bcm.edu<mailto:sludtke at bcm.edu>>
> Baylor College of Medicine
> Charles C. Bell Jr., Professor of Structural Biology
> Dept. of Biochemistry and Molecular Biology (
> www.bcm.edu/biochem<http://www.bcm.edu/biochem>)
> Academic Director, CryoEM Core (
> cryoem.bcm.edu<http://cryoem.bcm.edu>)
> Co-Director CIBR Center (
> www.bcm.edu/research/cibr<http://www.bcm.edu/research/cibr>)
>
>
>
> On Mar 5, 2020, at 2:32 PM, Friedrich F?rster <f.g.forster at uu.nl<mailto:
> f.g.forster at uu.nl>> wrote:
>
> ***CAUTION:*** This email is not from a BCM Source. Only click links or
> open attachments you know are safe.
> ________________________________
> Dear 3D-EM,
>
> We would like to announce SHape REtrieval Contest (SHREC) 2020 track
> "Classification in Cryo-Electron Tomograms". In this track, we propose a
> task of localization and classification of biological particles in the
> cryo-electron tomograms. We provide a dataset of simulated tomograms with
> annotations and additional ground truth information. We hope this will
> enable researchers to try out different methods, including machine learning
> approaches.
>
> Track participants will have 4 weeks to send us their results (text file
> with a list of found and classified particles, and one-page description of
> their method). Track results are evaluated, analyzed and combined into a
> joint paper, that will be submitted to and presented at 3D Object Retrieval
> Workshop, 4-5 September 2020: https://workshop.cgv.tugraz.at/3dor2020/<
> https://urldefense.proofpoint.com/v2/url?u=https-3A__workshop.cgv.tugraz.at_3dor2020_&d=DwMFaQ&c=ZQs-KZ8oxEw0p81sqgiaRA&r=Dk5VoQQ-wINYVssLMZihyC5Dj_sWYKxCyKz9E4Lp3gc&m=WQWsg1ffsdRMpCT3N2KurlValKUv0BSA79S5TEtJwJI&s=ZRhUa-_ujY1hScNGihjC3eox3CQMLTVVLJNwpVIO8No&e=
> >
> The general objective of the SHREC is to evaluate the effectiveness and
> compare localization and classification methods.
>
> If you are interested, please check out the website for more information:
> http://www.shrec.net/cryo-et/<
> https://urldefense.proofpoint.com/v2/url?u=http-3A__www.shrec.net_cryo-2Det_&d=DwMFaQ&c=ZQs-KZ8oxEw0p81sqgiaRA&r=Dk5VoQQ-wINYVssLMZihyC5Dj_sWYKxCyKz9E4Lp3gc&m=WQWsg1ffsdRMpCT3N2KurlValKUv0BSA79S5TEtJwJI&s=Na6EdCP08UsaaLiGVvgtlDpGfo_I_7UqfTLhyFVjTpY&e=
> >
>
> Best regards
>
> Ilja Gubins, Gijs van der Schot, Marten Chaillet, Remco Veltkamp,
> Friedrich F?rster
>
> --
> prof. dr. Friedrich Foerster
>
> Bijvoet Center for Biomolecular Research
> Utrecht University
> Padualaan 8
> 3584 CH Utrecht
> The Netherlands
>
> Tel: +31 30 253 4318
>
> http://www.uu.nl/en/research/cryo-em<
> https://urldefense.proofpoint.com/v2/url?u=http-3A__www.uu.nl_en_research_cryo-2Dem&d=DwMFaQ&c=ZQs-KZ8oxEw0p81sqgiaRA&r=Dk5VoQQ-wINYVssLMZihyC5Dj_sWYKxCyKz9E4Lp3gc&m=WQWsg1ffsdRMpCT3N2KurlValKUv0BSA79S5TEtJwJI&s=AzonDRX9DtQIG5Ieb7z1Fm4BfNFNs1S76l_r2Sd6sKM&e=
> >
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