<div dir="auto">I'd like to echo Steve's question....i'm a co-author on last year's paper, and haven't been able to read it. Really questioning the eurographics model..<div dir="auto"><br></div><div dir="auto">Nice idea, but the suppression of info is a prob.</div><div dir="auto"><br></div><div dir="auto">Ben H.</div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Thu, Mar 5, 2020, 5:07 PM <<a href="mailto:3dem-request@ncmir.ucsd.edu">3dem-request@ncmir.ucsd.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Send 3dem mailing list submissions to<br>
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Today's Topics:<br>
<br>
1. SHape REtrieval Contest (SHREC) 2020 track "Classification in<br>
Cryo-Electron Tomograms" (Friedrich F?rster)<br>
2. Re: SHape REtrieval Contest (SHREC) 2020 track<br>
"Classification in Cryo-Electron Tomograms" (Ludtke, Steven J.)<br>
<br>
<br>
----------------------------------------------------------------------<br>
<br>
Message: 1<br>
Date: Thu, 5 Mar 2020 21:32:58 +0100<br>
From: Friedrich F?rster <<a href="mailto:f.g.forster@uu.nl" target="_blank" rel="noreferrer">f.g.forster@uu.nl</a>><br>
To: <a href="mailto:3dem@ncmir.ucsd.edu" target="_blank" rel="noreferrer">3dem@ncmir.ucsd.edu</a><br>
Subject: [3dem] SHape REtrieval Contest (SHREC) 2020 track<br>
"Classification in Cryo-Electron Tomograms"<br>
Message-ID:<br>
<<a href="mailto:CALtyCEivD7bbBX8d7%2B-ag7CMvPFyxVW5cDL7tJrr5h%2B1sRobDg@mail.gmail.com" target="_blank" rel="noreferrer">CALtyCEivD7bbBX8d7+-ag7CMvPFyxVW5cDL7tJrr5h+1sRobDg@mail.gmail.com</a>><br>
Content-Type: text/plain; charset="utf-8"<br>
<br>
Dear 3D-EM,<br>
<br>
<br>
<br>
We would like to announce SHape REtrieval Contest (SHREC) 2020 track<br>
"Classification in Cryo-Electron Tomograms". In this track, we propose a<br>
task of localization and classification of biological particles in the<br>
cryo-electron tomograms. We provide a dataset of simulated tomograms with<br>
annotations and additional ground truth information. We hope this will<br>
enable researchers to try out different methods, including machine learning<br>
approaches.<br>
<br>
<br>
<br>
Track participants will have 4 weeks to send us their results (text file<br>
with a list of found and classified particles, and one-page description of<br>
their method). Track results are evaluated, analyzed and combined into a<br>
joint paper, that will be submitted to and presented at 3D Object Retrieval<br>
Workshop, 4-5 September 2020: <a href="https://workshop.cgv.tugraz.at/3dor2020/" rel="noreferrer noreferrer" target="_blank">https://workshop.cgv.tugraz.at/3dor2020/</a><br>
<br>
The general objective of the SHREC is to evaluate the effectiveness and<br>
compare localization and classification methods.<br>
<br>
<br>
<br>
If you are interested, please check out the website for more information:<br>
<a href="http://www.shrec.net/cryo-et/" rel="noreferrer noreferrer" target="_blank">http://www.shrec.net/cryo-et/</a><br>
<br>
<br>
<br>
Best regards<br>
<br>
<br>
<br>
Ilja Gubins, Gijs van der Schot, Marten Chaillet, Remco Veltkamp, Friedrich<br>
F?rster<br>
<br>
-- <br>
prof. dr. Friedrich Foerster<br>
<br>
Bijvoet Center for Biomolecular Research<br>
Utrecht University<br>
Padualaan 8<br>
3584 CH Utrecht<br>
The Netherlands<br>
<br>
Tel: +31 30 253 4318<br>
<br>
<a href="http://www.uu.nl/en/research/cryo-em" rel="noreferrer noreferrer" target="_blank">http://www.uu.nl/en/research/cryo-em</a><br>
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Message: 2<br>
Date: Thu, 5 Mar 2020 22:07:00 +0000<br>
From: "Ludtke, Steven J." <<a href="mailto:sludtke@bcm.edu" target="_blank" rel="noreferrer">sludtke@bcm.edu</a>><br>
To: Friedrich F?rster <<a href="mailto:f.g.forster@uu.nl" target="_blank" rel="noreferrer">f.g.forster@uu.nl</a>><br>
Cc: "<a href="mailto:3dem@ncmir.ucsd.edu" target="_blank" rel="noreferrer">3dem@ncmir.ucsd.edu</a>" <<a href="mailto:3dem@ncmir.ucsd.edu" target="_blank" rel="noreferrer">3dem@ncmir.ucsd.edu</a>><br>
Subject: Re: [3dem] SHape REtrieval Contest (SHREC) 2020 track<br>
"Classification in Cryo-Electron Tomograms"<br>
Message-ID: <<a href="mailto:2DA60190-8015-4883-8565-A96DDA1E7E05@bcm.edu" target="_blank" rel="noreferrer">2DA60190-8015-4883-8565-A96DDA1E7E05@bcm.edu</a>><br>
Content-Type: text/plain; charset="utf-8"<br>
<br>
Hi Fredrich,<br>
were the results from the last one ever made publicly available? Is the data and/or results of the last one available online somewhere? I looked briefly, and could find websites mentioning it, but little else? Not much motivation to participate if the results are all closed (other than resulting publications, of course).<br>
<br>
--------------------------------------------------------------------------------------<br>
Steven Ludtke, Ph.D. <<a href="mailto:sludtke@bcm.edu" target="_blank" rel="noreferrer">sludtke@bcm.edu</a><mailto:<a href="mailto:sludtke@bcm.edu" target="_blank" rel="noreferrer">sludtke@bcm.edu</a>>> Baylor College of Medicine<br>
Charles C. Bell Jr., Professor of Structural Biology<br>
Dept. of Biochemistry and Molecular Biology (<a href="http://www.bcm.edu/biochem" rel="noreferrer noreferrer" target="_blank">www.bcm.edu/biochem</a><<a href="http://www.bcm.edu/biochem" rel="noreferrer noreferrer" target="_blank">http://www.bcm.edu/biochem</a>>)<br>
Academic Director, CryoEM Core (<a href="http://cryoem.bcm.edu" rel="noreferrer noreferrer" target="_blank">cryoem.bcm.edu</a><<a href="http://cryoem.bcm.edu" rel="noreferrer noreferrer" target="_blank">http://cryoem.bcm.edu</a>>)<br>
Co-Director CIBR Center (<a href="http://www.bcm.edu/research/cibr" rel="noreferrer noreferrer" target="_blank">www.bcm.edu/research/cibr</a><<a href="http://www.bcm.edu/research/cibr" rel="noreferrer noreferrer" target="_blank">http://www.bcm.edu/research/cibr</a>>)<br>
<br>
<br>
<br>
On Mar 5, 2020, at 2:32 PM, Friedrich F?rster <<a href="mailto:f.g.forster@uu.nl" target="_blank" rel="noreferrer">f.g.forster@uu.nl</a><mailto:<a href="mailto:f.g.forster@uu.nl" target="_blank" rel="noreferrer">f.g.forster@uu.nl</a>>> wrote:<br>
<br>
***CAUTION:*** This email is not from a BCM Source. Only click links or open attachments you know are safe.<br>
________________________________<br>
Dear 3D-EM,<br>
<br>
We would like to announce SHape REtrieval Contest (SHREC) 2020 track "Classification in Cryo-Electron Tomograms". In this track, we propose a task of localization and classification of biological particles in the cryo-electron tomograms. We provide a dataset of simulated tomograms with annotations and additional ground truth information. We hope this will enable researchers to try out different methods, including machine learning approaches.<br>
<br>
Track participants will have 4 weeks to send us their results (text file with a list of found and classified particles, and one-page description of their method). Track results are evaluated, analyzed and combined into a joint paper, that will be submitted to and presented at 3D Object Retrieval Workshop, 4-5 September 2020: <a href="https://workshop.cgv.tugraz.at/3dor2020/" rel="noreferrer noreferrer" target="_blank">https://workshop.cgv.tugraz.at/3dor2020/</a><<a href="https://urldefense.proofpoint.com/v2/url?u=https-3A__workshop.cgv.tugraz.at_3dor2020_&d=DwMFaQ&c=ZQs-KZ8oxEw0p81sqgiaRA&r=Dk5VoQQ-wINYVssLMZihyC5Dj_sWYKxCyKz9E4Lp3gc&m=WQWsg1ffsdRMpCT3N2KurlValKUv0BSA79S5TEtJwJI&s=ZRhUa-_ujY1hScNGihjC3eox3CQMLTVVLJNwpVIO8No&e=" rel="noreferrer noreferrer" target="_blank">https://urldefense.proofpoint.com/v2/url?u=https-3A__workshop.cgv.tugraz.at_3dor2020_&d=DwMFaQ&c=ZQs-KZ8oxEw0p81sqgiaRA&r=Dk5VoQQ-wINYVssLMZihyC5Dj_sWYKxCyKz9E4Lp3gc&m=WQWsg1ffsdRMpCT3N2KurlValKUv0BSA79S5TEtJwJI&s=ZRhUa-_ujY1hScNGihjC3eox3CQMLTVVLJNwpVIO8No&e=</a>><br>
The general objective of the SHREC is to evaluate the effectiveness and compare localization and classification methods.<br>
<br>
If you are interested, please check out the website for more information: <a href="http://www.shrec.net/cryo-et/" rel="noreferrer noreferrer" target="_blank">http://www.shrec.net/cryo-et/</a><<a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__www.shrec.net_cryo-2Det_&d=DwMFaQ&c=ZQs-KZ8oxEw0p81sqgiaRA&r=Dk5VoQQ-wINYVssLMZihyC5Dj_sWYKxCyKz9E4Lp3gc&m=WQWsg1ffsdRMpCT3N2KurlValKUv0BSA79S5TEtJwJI&s=Na6EdCP08UsaaLiGVvgtlDpGfo_I_7UqfTLhyFVjTpY&e=" rel="noreferrer noreferrer" target="_blank">https://urldefense.proofpoint.com/v2/url?u=http-3A__www.shrec.net_cryo-2Det_&d=DwMFaQ&c=ZQs-KZ8oxEw0p81sqgiaRA&r=Dk5VoQQ-wINYVssLMZihyC5Dj_sWYKxCyKz9E4Lp3gc&m=WQWsg1ffsdRMpCT3N2KurlValKUv0BSA79S5TEtJwJI&s=Na6EdCP08UsaaLiGVvgtlDpGfo_I_7UqfTLhyFVjTpY&e=</a>><br>
<br>
Best regards<br>
<br>
Ilja Gubins, Gijs van der Schot, Marten Chaillet, Remco Veltkamp, Friedrich F?rster<br>
<br>
--<br>
prof. dr. Friedrich Foerster<br>
<br>
Bijvoet Center for Biomolecular Research<br>
Utrecht University<br>
Padualaan 8<br>
3584 CH Utrecht<br>
The Netherlands<br>
<br>
Tel: +31 30 253 4318<br>
<br>
<a href="http://www.uu.nl/en/research/cryo-em" rel="noreferrer noreferrer" target="_blank">http://www.uu.nl/en/research/cryo-em</a><<a href="https://urldefense.proofpoint.com/v2/url?u=http-3A__www.uu.nl_en_research_cryo-2Dem&d=DwMFaQ&c=ZQs-KZ8oxEw0p81sqgiaRA&r=Dk5VoQQ-wINYVssLMZihyC5Dj_sWYKxCyKz9E4Lp3gc&m=WQWsg1ffsdRMpCT3N2KurlValKUv0BSA79S5TEtJwJI&s=AzonDRX9DtQIG5Ieb7z1Fm4BfNFNs1S76l_r2Sd6sKM&e=" rel="noreferrer noreferrer" target="_blank">https://urldefense.proofpoint.com/v2/url?u=http-3A__www.uu.nl_en_research_cryo-2Dem&d=DwMFaQ&c=ZQs-KZ8oxEw0p81sqgiaRA&r=Dk5VoQQ-wINYVssLMZihyC5Dj_sWYKxCyKz9E4Lp3gc&m=WQWsg1ffsdRMpCT3N2KurlValKUv0BSA79S5TEtJwJI&s=AzonDRX9DtQIG5Ieb7z1Fm4BfNFNs1S76l_r2Sd6sKM&e=</a>><br>
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</blockquote></div>