[3dem] 3dem Digest, Vol 133, Issue 23

Tue Sep 11 10:49:49 PDT 2018

Just install Ghostscript, it should work. It actually works without
ghostscript for me but relion gui does not recognize the job as finished
and some other output files are not shown on the gui.

On Tue, Sep 11, 2018 at 9:53 AM <3dem-request at ncmir.ucsd.edu> wrote:

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> Today's Topics:
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>    1. Negative stain on graphene oxyde grids (Julien Bous)
>    2. Re: Compiling RELION3 for TIFF files (Dominique  Gutierrez)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Tue, 11 Sep 2018 17:55:17 +0200
> From: Julien Bous <julien.bous at etu.umontpellier.fr>
> To: 3dem at ncmir.ucsd.edu
> Subject: [3dem] Negative stain on graphene oxyde grids
> Message-ID: <0320aefb-5391-678a-48ba-a15485d6902b at etu.umontpellier.fr>
> Content-Type: text/plain; charset="utf-8"; Format="flowed"
>
> Dear Community,
>
> I'm PhD student in cryoEM and I plan to use graphene oxide grids for a
> complicate sample.Therefore, in order to make a first assessment of the
> interaction between the graphene oxide and my sample, I want to try in
> first to do a negative stain on graphene oxide with my sample Has anyone
> ever seen or tried this , I didn't find any bibliography?And is it looks
> like a good idea for more experienced peoples?
>
> Thank you very much for your time.
>
> Best,
>
> Julien
>
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> ------------------------------
>
> Message: 2
> Date: Tue, 11 Sep 2018 16:53:04 +0000
> From: "Dominique  Gutierrez" <dgutierrez at gradcenter.cuny.edu>
> To: Takanori Nakane <tnakane at mrc-lmb.cam.ac.uk>, "3dem at ncmir.ucsd.edu"
>         <3dem at ncmir.ucsd.edu>
> Subject: Re: [3dem] Compiling RELION3 for TIFF files
> Message-ID:
>         <
> BN7PR11MB25314E1488FCB69CC0052DD485040 at BN7PR11MB2531.namprd11.prod.outlook.com
> >
>
> Content-Type: text/plain; charset="iso-8859-1"
>
> Hello,
>
>
> Thanks very much! Installing the library and recompiling relion3 looked
> like relion found the library but I now get the ghostscript error attached.
> Could this be because it is not linked correctly? How exactly would I need
> to link it? The system is a linux version 3.10.0-514.21.2.el7.x86_64.
>
>
> Best Regards,
>
> Dominique Gutierrez
>
> ________________________________
> From: 3dem <3dem-bounces at ncmir.ucsd.edu> on behalf of Takanori Nakane <
> tnakane at mrc-lmb.cam.ac.uk>
> Sent: Monday, September 10, 2018 4:28:08 PM
> To: 3dem at ncmir.ucsd.edu
> Subject: Re: [3dem] Compiling RELION3 for TIFF files
>
> Hi,
>
> It depends on your system, but usually you can install as
> packages like libtiff-dev, libtiff-devel, etc.
> (You need 'developer' packages that includes header files,
> not just dynamic link libraries)
>
> Best regards,
>
> Takanori Nakane
>
> On 2018/09/10 21:08, Dominique  Gutierrez wrote:
> > Hello,
> >
> >
> > I am trying to run motioncorr2 via relion3 on TIFF files. I get the
> error message attached TIFF support not being enabled during compilation.
> How should relion3 be compiled to run with tiff files? Any help would be
> much appreciated!
> >
> >
> > Best,
> >
> > Dominique Gutierrez
> >
> >
> >
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