[3dem] Announcing the release of CryoFIT

[Michael Purdy]

I only had to change the "home_dir =" line with the installation files 
in the "src" subdirectory.

On 02/13/2018 01:00 PM, Michael Purdy wrote:
> Hi, Dieter, I had some trouble too because the installation script is 
> specific to installation in the user's home directory, as shown in the 
> instructions. Since I was installing elsewhere, I had to modify 
> install_cryoFIT.py to specify my install location. The two lines I 
> edited are below (N.B. change your_installation_directory). After that 
> change the installation succeeded.
>
> home_dir = expanduser("your_installation_directory")
>
> src_dir = home_dir + "/src"
>
> Michael
>
> On 02/13/2018 01:39 AM, Dieter Blaas wrote:
>>
>> Dear colleagues,
>>
>>     has anybody already installed and tested CryoFit and could give 
>> me a hint as to how to install it? I tried to do so by following the 
>> description on the Github site but so far failed. Thanks, Dieter
>>
>> ------------------------------------------------------------------------
>> Dieter Blaas,
>> Max F. Perutz Laboratories
>> Medical University of Vienna,
>> Inst. Med. Biochem., Vienna Biocenter (VBC),
>> Dr. Bohr Gasse 9/3,
>> A-1030 Vienna, Austria,
>> Tel: 0043 1 4277 61630,
>> Fax: 0043 1 4277 9616,
>> e-mail:dieter.blaas at meduniwien.ac.at
>> ------------------------------------------------------------------------
>> Am 07.02.2018 um 10:10 schrieb Sanbonmatsu, Karissa Yoshiko:
>>>
>>> Dear colleagues,
>>>
>>>
>>> We are excited to announce the release of CryoFIT, a program 
>>> for fitting atomistic models to cryo-EM maps. The current version 
>>> is designed for fitting lower resolution maps but this does not 
>>> preclude use with higher resolution maps. The CryoFIT module is 
>>> built on Gromacs and accessible through Phenix 
>>> (https://www.phenix-online.org/documentation/reference/cryo_fit.html), 
>>> currently via GitHub. It supports both the Phenix GUI and the 
>>> command line.  CryoFIT is based on the algorithm in Kirmiziatltin, 
>>> et al., Methods of Enzymology 2015 
>>> (https://doi.org/10.1016/bs.mie.2015.02.011). This is an alpha 
>>> version. Please send any feature requests and bug reports to Doo Nam 
>>> Kim (doonam at lanl.gov).
>>>
>>>
>>> Happy Modeling!
>>>
>>>
>>> Karissa
>>>
>>>
>>> ***********************************
>>>
>>> Karissa Y. Sanbonmatsu
>>>
>>> Principal Investigator
>>>
>>> Theoretical Biology and Biophysics
>>>
>>> Theoretical Division
>>>
>>> Los Alamos National Laboratory
>>>
>>> http://www.lanl.gov/projects/karissa
>>>
>>> http://www.t10.lanl.gov/kys <http://www.t6.lanl.gov/kys>
>>>
>>> ***********************************
>>>
>>>
>>>
>>> _______________________________________________
>>> 3dem mailing list
>>> 3dem at ncmir.ucsd.edu
>>> https://mail.ncmir.ucsd.edu/mailman/listinfo/3dem
>>
>>
>>
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>
>
>
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