[3dem] Recommendation for model building software

Natesh Ramanathan natesh at iisertvm.ac.in
Wed Aug 22 11:10:59 PDT 2018

Hi Alka,

          Coot & refmac you may be familiar with... -  They are available
as part of CCP-EM.
          I assume you want to build model in the cryo-EM/ negative stain
EM maps. Phenix can also do the refinement.
          FlexEM and MDFF are there for flexible model fitting.

         There are many many other softwares as well.  But I may not be
able to list them all here.

Hope you find a suitable one for you.
You can find an exhaustive list of EM softwares in the EMDB

Best regards,

On Wed, 22 Aug 2018 at 23:18, Alka Agrawal <aagrawal at tetragenetics.com>

> Hello everyone,
> I’m new to cryo-EM (I did some crystallography many years ago) and was
> wondering what model-building software you recommend? I’m at a company so
> we’d likely have to pay for it, so lower cost options are preferable.
> Ideally I’d like software that can be also used for analysis of the final
> model, making figures, etc.
> Thanks
> [image: http://www.tetragenetics.com/wp-content/uploads/2016/08/blank.gif]
> *Alka Agrawal, PhD*
> Senior Scientist
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"Live Simply and do Serious Things .. "
- Dorothy Mary Crowfoot Hodgkin OM, FRS

"In Science truth always wins"
- Max Ferdinand Perutz OM FRS
Dr. Ramanathan Natesh
Assistant Professor,
School of Biology,
Indian Institute of Science Education and Research Thiruvananthapuram
Maruthamala P.O., Vithura,
Thiruvananthapuram,  695551, Kerala, India

natesh at iisertvm.ac.in
ORCID: http://orcid.org/0000-0002-1145-5962

Office Ph. 0091- 471-2778087
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