[3dem] Recommendation for model building software

Natesh Ramanathan natesh at iisertvm.ac.in
Wed Aug 22 11:10:59 PDT 2018


Hi Alka,

          Coot & refmac you may be familiar with... -  They are available
as part of CCP-EM.
          I assume you want to build model in the cryo-EM/ negative stain
EM maps. Phenix can also do the refinement.
          FlexEM and MDFF are there for flexible model fitting.

         There are many many other softwares as well.  But I may not be
able to list them all here.

Hope you find a suitable one for you.
You can find an exhaustive list of EM softwares in the EMDB
http://www.emdatabank.org/emsoftware.html

Best regards,
Natesh

On Wed, 22 Aug 2018 at 23:18, Alka Agrawal <aagrawal at tetragenetics.com>
wrote:

> Hello everyone,
>
>
>
> I’m new to cryo-EM (I did some crystallography many years ago) and was
> wondering what model-building software you recommend? I’m at a company so
> we’d likely have to pay for it, so lower cost options are preferable.
> Ideally I’d like software that can be also used for analysis of the final
> model, making figures, etc.
>
>
>
> Thanks
>
> [image: http://www.tetragenetics.com/wp-content/uploads/2016/08/blank.gif]
>
> *Alka Agrawal, PhD*
> Senior Scientist
>
> [image:
> http://www.tetragenetics.com/wp-content/uploads/2016/08/logo-email-sig.gif]
>
> 91 Mystic Street, Arlington, MA 02474
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>
>
>
>
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-- 
----------------------------------------------------------
"Live Simply and do Serious Things .. "
- Dorothy Mary Crowfoot Hodgkin OM, FRS

"In Science truth always wins"
- Max Ferdinand Perutz OM FRS
----------------------------------------------------------
Dr. Ramanathan Natesh
Assistant Professor,
School of Biology,
Indian Institute of Science Education and Research Thiruvananthapuram
(IISER-TVM),
Maruthamala P.O., Vithura,
Thiruvananthapuram,  695551, Kerala, India

natesh at iisertvm.ac.in
http://www.researcherid.com/rid/C-4488-2008
ORCID: http://orcid.org/0000-0002-1145-5962
https://publons.com/author/1520837/ramanathan-natesh#profile
http://faculty.iisertvm.ac.in/natesh

Office Ph. 0091- 471-2778087
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