[3dem] Places still available: CeNS workshop in Munich "SPIDER & Scipion: Image-processing of electron micrographs" 3./4.11.

[Dario]

Dear colleagues,

CeNS offers a *free workshop* “SPIDER & Scipion: Image-processing of 
electron micrographs 
<http://www.cens.de/calendar/workshops-events/spider-scipion-workshop-image-processing-of-electron-micrographs/>” 
on November 3-4, 10:00-18:00h, in Munich.

_Instructors_:*
*

*Dr. Tanvir Shaikh*, CEITEC/Brno

*Jose Miguel de la Rosa Trevin*, National Center for Biotechnology, 
CSIC, Madrid

_Talks_:

*Rasmus Schröder*, Heidelberg University:

*Daniel Wilson,*LMU Genecenter

*Jürgen Plitzko*, MPI of Biochemistry


In this workshop you will be introduced to single particle techniques 
for EM and learn about advanced applications of the image processing 
softwares *SPIDER and Scipion*. Each day will start with*talks by guest 
speakers* about their research in the field of electron microscopy.
The following *hands-on-workshops* will give you the opportunity to 
practice and apply different software packages for single particle 
analysis. We will cover topics such as alignment of direct-detector 
frames, defocus estimation, particle-picking, initial-volume 
reconstruction and 2D/3D classification. On day 1 of the workshop you 
will learn and practice the usage of the image processing suite *SPIDER*.
Day 2 will cover the framework *Scipion*, which integrates several 
software packages for image processing and their workflows, such as 
*XMIPP, SPIDER, EMAN2, RELION, CTFFIND4.*

_Workshop schedule:_


*Thursday, November 3, 10:00-12:00*      Talk by Dr. Daniel Wilson, LMU 
Genecenter: Coping with Stress (on the Bacterial Ribosome)

HU123, Schellingstr. 4                                Talk by Prof. 
Rasmus Schröder, Heidelberg University: title tba

*Thursday, November 3, 12:00-18:00*       SPIDER Practical (30 
participants max), *Dr. Tanvir Shaikh*, CEITEC/Brno

CIP 1, Schellingstr. 4

*Friday, November 4, 10:00-11:00*             Talk by Prof. Jürgen 
Plitzko, MPI of Biochemistry: title tba

Kleiner Physikhörsaal N020,
LMU Main Building

*Friday, November 4, 11:00-18:00*             Scipion Practical (30 
participants max), *Jose Miguel de la Rosa Trevin*, National Center for 
Biotechnology, CSIC, Madrid

CIP 1, Schellingstr. 4



You can register for this workshop by sending an e-mail to Susanne 
Hennig. <mailto:hennig at cens.de> *There is no participation fee.*

Please provide the following information:

1) General information

- prior experience with EM

- institution & supervisor

2) In which part of the event are you interested?

- talks + practicals

- only talks

- only practicals

For further questions, please contact Dario Saczko-Brack 
<mailto:Dario.Saczko-Brack at med.uni-muenchen.de>.

Best regards,

Dario Saczko-Brack
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