[3dem] Volume slicer - a web based slice viewer for EMDB entries

[Ardan Patwardhan]

Dear all

I wanted to let you know that the Volume slicer (a web based slice viewer for EMDB entries) is now in full production. The viewer allows you to interactively view slices of the 3D reconstruction from 3 orthogonal directions.

The Volume slicer for EMDB entry EMD-#### can be accessed via a link of the type: http://pdbe.org/emd-####/3dslice, for example for EMD-6288 the link is: http://pdbe.org/emd-6288/3dslice


You can read more about the Volume slicer in the following paper: 

Salavert-Torres, J., Iudin, A., Lagerstedt, I., Sanz-Garcia, E., Kleywegt, G. J., & Patwardhan, A. (2016). Web-based volume slicer for 3D electron-microscopy data from EMDB. J Struct Biol, 194(2), 164-170. doi:10.1016/j.jsb.2016.02.012 (http://www.sciencedirect.com/science/article/pii/S1047847716300272)

and in the following blog:

http://www.ebi.ac.uk/pdbe/about/news/big-picture-3d-structure-molecules-cells

We welcome your feedback and comments!

Many thanks and best wishes

Ardan

Ardan Patwardhan
Coordinator - cellular structure & PDBe production
Protein Data Bank in Europe (PDBe)
European Bioinformatics Institute (EMBL-EBI) European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton, Cambridge CB10 1SD
Tel: +44 1223 492649
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ncmir.ucsd.edu/pipermail/3dem/attachments/20160421/24f1de03/attachment.html>