[3dem] Difference between ".box" co-ordinate files for EMAN1 and EMAN2

mbycliaw mbycliaw at gate.sinica.edu.tw
Tue Jun 28 17:22:47 PDT 2011

Just modify if len(lista) == 5: in boxer2mark.py
To                  if len(lista) == 4:
Yen-Chywan Liaw
Institute of Molecular Biology
Academia Sinica, Taiwan



From: 3dem-bounces at ncmir.ucsd.edu [mailto:3dem-bounces at ncmir.ucsd.edu] On Behalf Of SAIKAT CHOWDHURY
Sent: Wednesday, June 29, 2011 6:54 AM
To: 3dem at ncmir.ucsd.edu
Subject: [3dem] Difference between ".box" co-ordinate files for EMAN1 and EMAN2



I have recently encountered a problem with converting EMAN2 box co-ordinates into XMIPP ".pos" file using the Boxer2mark.py script from XMIPP (http://xmipp.cnb.csic.es/twiki/bin/view/Xmipp/FAQ). I realized that the ".box" files from EMAN2 has one column less than EMAN1 ".box" files. Does any body know what is the last column or additional column in EMAN1 for? Is there any way one can convert several EMAN2- ".box" files to EMAN1- ".box" files in batch mode?



Graduate Student(PhD)
405 South Frear Laboratory
Department of Biochemistry & Molecular Biology
The Pennsylvania State University
University Park
PA 16802

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