[3dem] Time-stamped Copies of PDB and EMDB Archives
Justin Flatt
justin at rcsb.rutgers.edu
Thu Jan 4 06:41:51 PST 2024
A snapshot of the PDB Core archive (https://urldefense.com/v3/__ftp://ftp.wwpdb.org__;!!Mih3wA!HROI6L2s27XNL9pphncrTRUWvlvgx4cHlpkDf5EvalXwYg1CARzyIj4Y8g6bf1Of3IAFbXDTO5VlRNXe0jxMVytS$ ,
https://urldefense.com/v3/__https://s3.rcsb.org__;!!Mih3wA!HROI6L2s27XNL9pphncrTRUWvlvgx4cHlpkDf5EvalXwYg1CARzyIj4Y8g6bf1Of3IAFbXDTO5VlRNXe0hKUDYQ4$ ) as of January 2, 2024 has been added to
https://urldefense.com/v3/__ftp://snapshots.wwpdb.org__;!!Mih3wA!HROI6L2s27XNL9pphncrTRUWvlvgx4cHlpkDf5EvalXwYg1CARzyIj4Y8g6bf1Of3IAFbXDTO5VlRNXe0hvSEUVO$ , https://urldefense.com/v3/__https://s3snapshots.rcsb.org__;!!Mih3wA!HROI6L2s27XNL9pphncrTRUWvlvgx4cHlpkDf5EvalXwYg1CARzyIj4Y8g6bf1Of3IAFbXDTO5VlRNXe0nSdZZxd$ (AWS), and
https://urldefense.com/v3/__ftp://snapshots.pdbj.org__;!!Mih3wA!HROI6L2s27XNL9pphncrTRUWvlvgx4cHlpkDf5EvalXwYg1CARzyIj4Y8g6bf1Of3IAFbXDTO5VlRNXe0gSmvR3O$ . Snapshots have been archived annually since
2005 to provide readily identifiable data sets for research on the PDB
archive.
The directory 20240101 includes the 214,121 experimentally-determined
structure and experimental data available at that time. Atomic
coordinate and related metadata are available in PDBx/mmCIF, PDB, and
XML file formats. The date and time stamp of each file indicates the
last time the file was modified. The snapshot of PDB Core Archive is
1,242 GB.
A snapshot of the EMDB Core archive
(https://urldefense.com/v3/__ftp://ftp.ebi.ac.uk/pub/databases/emdb/__;!!Mih3wA!HROI6L2s27XNL9pphncrTRUWvlvgx4cHlpkDf5EvalXwYg1CARzyIj4Y8g6bf1Of3IAFbXDTO5VlRNXe0kytsswG$ ) as of January 01, 2024 can be
found in https://urldefense.com/v3/__ftp://ftp.ebi.ac.uk/pub/databases/emdb_vault/20240101/__;!!Mih3wA!HROI6L2s27XNL9pphncrTRUWvlvgx4cHlpkDf5EvalXwYg1CARzyIj4Y8g6bf1Of3IAFbXDTO5VlRNXe0iNQ882G$ and
https://urldefense.com/v3/__ftp://snapshots.pdbj.org/20240101/__;!!Mih3wA!HROI6L2s27XNL9pphncrTRUWvlvgx4cHlpkDf5EvalXwYg1CARzyIj4Y8g6bf1Of3IAFbXDTO5VlRNXe0jT_WdiT$ . The snapshot of EMDB Core Archive
contains map files and their metadata within XML files for both released
and obsoleted entries (32,033 and 282, respectively) and is 14 TB in
size.
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