[3dem] Enhanced Collection of Starting Models
Justin Flatt
justin at rcsb.rutgers.edu
Thu Feb 2 11:31:24 PST 2023
A new PDBx/mmCIF category, _pdbx_initial_refinement_model, has been
introduced to improve information collected about starting models for
X-ray, 3DEM, and NMR methods.
Experimentally derived vs computed models will be distinguished.
Provenances of the resources where the starting model was obtained
(e.g., PDB, AlphaFoldDB, RoseTTAFold, etc.) and its accession
code/identifier will be captured, if publicly available.
Definition and example of this data category is available at
https://urldefense.com/v3/__https://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v5_next.dic/Categories/pdbx_initial_refinement_model.html__;!!Mih3wA!FHMdTj39KDUX8SMfyxieDceeZQR6hxYWYK-U6MoRYzQH56ybpCIIl4Do0xFkJxJVVAgTOwse_O_1Q-W-HPSd9cZk$ .
_pdbx_initial_refinement_model.id
_pdbx_initial_refinement_model.entity_id_list
_pdbx_initial_refinement_model.type
_pdbx_initial_refinement_model.source_name
_pdbx_initial_refinement_model.accession_code
_pdbx_initial_refinement_model.details
wwPDB strongly recommends all PDB users and software developers to
review code and adopt this for future applications.
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