[3dem] double spaces in relion star files...
Takanori Nakane
tnakane at mrc-lmb.cam.ac.uk
Wed Aug 11 15:35:10 PDT 2021
Hi,
> empty values should be quoted as ""
This is correct but third party scripts/programs do not necessarily support quotation.
I would avoid storing empty values in particle STAR files if ever possible.
Best regards,
Takanori Nakane
On 2021/08/12 1:57, Grigory Sharov wrote:
> Hi Pablo,
>
> empty values should be quoted as ""
>
> Best regards,
> Grigory
>
> --------------------------------------------------------------------------------
> Grigory Sharov, Ph.D.
>
> MRC Laboratory of Molecular Biology,
> Francis Crick Avenue,
> Cambridge Biomedical Campus,
> Cambridge CB2 0QH, UK.
> tel. +44 (0) 1223 267228 <tel:+44%201223%20267228>
> e-mail: gsharov at mrc-lmb.cam.ac.uk <mailto:gsharov at mrc-lmb.cam.ac.uk>
>
>
> On Wed, Aug 11, 2021 at 5:55 PM Pablo Conesa <pconesa at cnb.csic.es <mailto:pconesa at cnb.csic.es>> wrote:
>
> Just found other examples ofr star files and they have several spaces as separator:
>
> 0 0.001001 999.000000 1.000000 1.000000 1.000000 1.000000 1.000000
>
>
> So I guess what I reported before is not a valid way of specifying an empty value.
>
>
> On 11/8/21 18:45, Pablo Conesa wrote:
>>
>> Dear all, developers.
>>
>> I've found a starfile with this kind of lines:
>>
>> 000001 at J97/imported/mic_000002.mrcs <mailto:000001 at J97/imported/mic_000002.mrcs> 0.000000 180.000000 0.000000 ...
>>
>>
>> Note that there are *2 non obvious spaces after 180.000000*!!
>>
>> So, are the 2 spaces enclosing a "value" (empty in this case) ?
>>
>> Sorry if it is written somewhere. I've looked here: https://urldefense.proofpoint.com/v2/url?u=https-3A__relion.readthedocs.io_en_latest_Reference_Conventions.html-23star-2Dformat&d=DwIDaQ&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=72I4RJqym8Ztz-Lf56GJyol4z3ursHdC_qK3-rF-9Jk&s=8Athtcsge6FUBfunP_NA2OisnkIvR3DUGHKmmTt0Qug&e=
>> <https://urldefense.proofpoint.com/v2/url?u=https-3A__relion.readthedocs.io_en_latest_Reference_Conventions.html-23star-2Dformat&d=DwMDaQ&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=Ej1d8bc3GyHeMSsgSWSRX1xyv9oQv2-Stoq5XbD7KJI&s=TemXzWj2LmNAHm1WkS74BohfSFyPNamjG3nSPdF9Ick&e=>
>>
>>
>> --
>> Pablo Conesa - *Madrid Scipion
>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__scipion.i2pc.es&d=DwMDaQ&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=Ej1d8bc3GyHeMSsgSWSRX1xyv9oQv2-Stoq5XbD7KJI&s=9SR7D8gpz3I5A8tObQncaptWoIhUoPX88UkxDsuqHKs&e=>
>> team*
>>
>> _______________________________________________
>> 3dem mailing list
>> 3dem at ncmir.ucsd.edu <mailto:3dem at ncmir.ucsd.edu>
>> https://mail.ncmir.ucsd.edu/mailman/listinfo/3dem <https://mail.ncmir.ucsd.edu/mailman/listinfo/3dem>
> --
> Pablo Conesa - *Madrid Scipion
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__scipion.i2pc.es&d=DwMDaQ&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=ZFbG4d69tygk7gLrd147MpnPivQr34LFv6AIr1wBGIM&s=GxSipGdQH2QkIdMG_VzPeCcsXqZKWHCk672NLvpA904&e=>
> team*
> _______________________________________________
> 3dem mailing list
> 3dem at ncmir.ucsd.edu <mailto:3dem at ncmir.ucsd.edu>
> https://mail.ncmir.ucsd.edu/mailman/listinfo/3dem <https://mail.ncmir.ucsd.edu/mailman/listinfo/3dem>
>
>
> _______________________________________________
> 3dem mailing list
> 3dem at ncmir.ucsd.edu
> https://mail.ncmir.ucsd.edu/mailman/listinfo/3dem
>
More information about the 3dem
mailing list