[3dem] error with relion
Dienemann, Christian
christian.dienemann at mpibpc.mpg.de
Sun Aug 18 03:17:54 PDT 2019
Hi Jacopo,
I had this before with particles that went through cryoSPARC before and I think it helped to delete the _rlnRandomSubset column from the respective STAR file.
Best,
Chris
Dr. Christian Dienemann
Max-Planck-Institute for Biophysical Chemistry
Department of Molecular Biology / Cramer lab
Am Fassberg 11
37077 Göttingen, Germany
+49-551-201-2819
From: 3dem <3dem-bounces at ncmir.ucsd.edu> On Behalf Of Jacopo Marino
Sent: Wednesday, August 14, 2019 2:26 PM
To: 3dem at ncmir.ucsd.edu
Subject: [3dem] error with relion
Dear all,
hope I can get some help on a issue with relion I can't solve. I get an error only at the 3D auto-refine step, and it is not related to slurm.
I'm not doing any helical reconstruction so I can't see why the error points in that direction. I attach a few screenshots of the relion gui.
Thanks a lot for your help !
Jacopo
[cid:image001.png at 01D555BE.B3F87750]
[cid:image002.png at 01D555BE.B3F87750]
--
Dr. Jacopo Marino
Laboratory of Biomolecular Research
Paul Scherrer Institute
OFLB/005
5232 Villigen PSI, Switzerland
tel: +41 56 310 5484 (or +41 56 310 5777)
e-mail: jacopo.marino at psi.ch<mailto:jacopo.marino at psi.ch>
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