[3dem] using nad_eed
Christopher Gilpin
christopher.gilpin at utsouthwestern.edu
Fri Nov 7 09:04:00 PST 2008
Lea,
As Toby replied, nad_eed is indeed part of IMOD.
I just ran a quick test and your syntax for the command is correct and works
fine on a data set I have here.
If your tomo.rec is on your desktop then try using the imod command header
tomo.rec to inspect the file.
Chris
Christopher J Gilpin Ph.D.
Assistant Professor
Director, Molecular and Cellular Imaging Facility
K1.A04
UT Southwestern Medical Center at Dallas
5323 Harry Hines Boulevard
Dallas, TX 75390-9039
Phone +1 214 648 2827
Fax +1 214 648 6408
From: 3dem-bounces at ncmir.ucsd.edu [mailto:3dem-bounces at ncmir.ucsd.edu] On
Behalf Of Léa
Sent: Thursday, November 06, 2008 3:37 AM
To: 3dem at ncmir.ucsd.edu
Subject: [3dem] using nad_eed
Dear all,
I'd like to use the nad_eed _3d program to denoise some tomograms. I made a
small stack to test the different parameters but I get the following error
message:
bcsmac68:~/Desktop lea$ nad_eed_3d -i 3,6,9,12,15,18,21 -k 1.2 tomo.rec
tomo.nad
Program nad_eed_3d
started at: Tue Nov 4 15:27:30 2008
input file: tomo.rec
output file: tomo.nad
ERROR: nad_eed_3d - reading header of input file tomo.rec
Any idea how to solve this?
Otherwise I also tried to do this using the parallel processing but I didn't
manage to have it proccessing...
Many thanks for your help!
Lea Siksou
PhD student
INSERM U789 - Biologie Cellulaire de la Synapse Normale et Pathologique
Ecole Normale Superieure
46 rue d'Ulm
75005 Paris
France
tel: 00331 4432 3533
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