Announcement of new services from the EBI-MSD Group
emdep
emdep at ebi.ac.uk
Wed Jun 19 02:00:49 PDT 2002
** Announcement of New Services to the PDB **
# Secondary Structure Matching
a tool for protein structure comparison
URL : http://www.ebi.ac.uk/msd-srv/ssm
Author: Eugene Krissinel <keb at ebi.ac.uk>
This is an interactive service for comparing protein structures in 3D
based on a new algorithm for common subgraph isomorphism
# Hetgroup interface for accessing the ligands and small molecule
dictionary of compounds found in the PDB
URL: http://www.ebi.ac.uk/msd-srv/chempdb
Author: Dimitris Dimitropoulos <dimitris at ebi.ac.uk>
An interface to an MSD reference data warehouse containing a
consistent and enriched library of all the small molecules and
monomers that are refered in any macromolecular structure.
** Please Note as of today (Wed Jun 19 2002) the following EBI/MSD
services were moved from an SGI server to a SUN server.
http://oca.ebi.ac.uk/ Integrates data query form for the PDB
http://pqs.ebi.ac.uk/ Protein Quaternary Structure Query Form
http://autodep.ebi.ac.uk/ PDB deposition form
http://capri.ebi.ac.uk/ Home page for protein-protein docking
for structure prediction
http://iims.ebi.ac.uk/ Some aspects of Electron Microscopy
data model (Home Page:
http://www.ebi.ac.uk/msd/MSDProjects/IIMShome.html)
We would welcome feedback to msd at ebi.ac.uk on any problems
user may encounter during this change over period. This weeks
PDB update is the first under the new operating system.
Also note that
- the service http://relibase.ebi.ac.uk/
from 1-July-2002 will be temporarily directed to
http://relibase.ccdc.cam.ac.uk/
until a linux version is re-instated at the EBI.
- the service http://www.ebi.ac.uk:80/dali/ is in the process
of a port from SGI to Linux and will be maintained after
1-July-2002 by the MSD group.
Janet Roser
Outreach Co-ordinator EBI-MSD
roser at ebi.ac.uk
+44 (0) 1223 492510
______________________________________________________________________
The PDB at EBI
Macromolecular Structure Database
EMBL Outstation Hinxton +44 (0) 1223 494444 switchboard
European Bioinformatics Institute +44 (0) 1223 494487 fax
Wellcome Trust Genome Campus 494697 pdbdep
Hinxton pdbdep at ebi.ac.uk
Cambridge CB10 1SD UK
______________________________________________________________________
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