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<p class="MsoNormal"><span style="font-size:11.0pt">Hello 3dem,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">We’re having trouble with getting the relion5 tomography pipeline working. When we launch an Exclude Tilt Images job, the napari window opens, but is blank. Run.out has the following output:<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">/opt/miniconda3/envs/relion-5.0/lib/python3.10/site-packages/tomography_python_programs/_qt/components/tilt_series_browser.py:157: DeprecationWarning: Argument 'interpolation' is deprecated, please use 'interpolation2d'
instead. The argument 'interpolation' was deprecated in 0.4.17 and it will be removed in 0.6.0.!<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">/opt/miniconda3/envs/relion-5.0/lib/python3.10/site-packages/napari/layers/image/image.py:389: DeprecationWarning: 'bicubic' is deprecated. Please use 'cubic' instead!<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">If I activate the relion conda environment and run the napari command manually, the window opens and appears to be functional, however if I try to open an image from the file menu, I get a lengthy traceback
that ends with this:<br>
<br>
NoAvailableReaderError: No plugin found capable of reading /working/micah/Relion-5.0/MotionCorr/job002/frames/TS_01_001_3_0.mrc.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">The associated github issue (with the full traceback) can be found
<a href="https://urldefense.com/v3/__https://github.com/3dem/relion/issues/1260__;!!Mih3wA!Ebs5rzn2yY9L9bj1TKuHYuacTHKw19TmAhXbR5bjvVeJAx7LT_aTskBVVlOGouLMRntO7MiaaJQLS_l0M2DjiPWh$">here</a>. Any help would be greatly appreciated.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Best,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">Micah Rapp<o:p></o:p></span></p>
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<p style="font-family:Calibri;font-size:12pt;color:#898989;margin:5pt;font-style:normal;font-weight:normal;text-decoration:none;" align="Center">
Regeneron - Internal<br>
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<p style="font-family:Calibri;font-size:12pt;color:#898989;margin:5pt;font-style:normal;font-weight:normal;text-decoration:none;" align="Center">
Regeneron - Internal<br>
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