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    <p>Dear Ioannis,</p>
    <p>Have you tried providing this option to AreTomo2 on the relion
      GUI using the "Other AreTomo2 arguments"?</p>
    <p>Best wishes,</p>
    <p>Sjors</p>
    <p><br>
    </p>
    <div class="moz-cite-prefix">On 25/02/2025 09:49, Ioannis Skalidis
      via 3dem wrote:<br>
    </div>
    <blockquote type="cite"
cite="mid:CA+Rin5LezbqAAsRzkWvjmQg7nrBdrG3USbqA8Kscv85ywaNjvQ@mail.gmail.com">
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          style="color: #9c6500;">CAUTION:</span> This email originated
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      <p>
        <br>
        --<br>
      </p>
      <div dir="ltr">
        <div>Dear 3DEM,</div>
        <div><br>
        </div>
        <div>I was wondering if anyone has an idea on how I would be
          able to generate the Imod folder necessary to move to other
          software for tomogram reconstruction, after I do tilt series
          alignment with AreTomo in Relion 5. The standalone version of
          AreTomo has the -OutImod command, but this cannot be included
          as an additional argument when running it from within Relion
          5. <br>
        </div>
        <div>Does anyone have a suggestion?</div>
        <div><br>
        </div>
        <div>Thanks in advance,</div>
        <div>Ioannis.</div>
        <div><br>
        </div>
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              <div
style="font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif;font-size:10pt"><span
                  style="color:rgb(102,102,102)">Dr. Ioannis Skalidis</span><span
                  style="color:gray"> </span><span
                  style="color:rgb(192,0,0)">| </span><span
                  style="color:rgb(102,102,102)">Structural Biochemist</span><span
                  style="color:gray"> </span><span
                  style="color:rgb(192,0,0)">| </span><span
                  style="color:rgb(102,102,102)">Twitter: <a
href="https://urldefense.com/v3/__https://twitter.com/imjohnskal__;!!Mih3wA!HtjwqhxZbS8vtn7LLqtm2t3KwOWyGyG32KIylQvFo4XVUlTcFtJfEAfEzuyeGAGyd82FJWXhUZbnxg8isLWhzDXA$"
                    target="_blank" moz-do-not-send="true">@imjohnskal</a></span><span
                  style="color:rgb(192,0,0)"> </span><span
                  style="color:rgb(192,0,0)">| </span><span
                  style="color:rgb(102,102,102)">Mobile: +30 698 807
                  7306</span><span style="color:gray"> </span><span
                  style="color:rgb(192,0,0)">| </span><font
                  color="#666666"><a
                    href="mailto:johnskalidis@gmail.com" target="_blank"
                    moz-do-not-send="true" class="moz-txt-link-freetext">johnskalidis@gmail.com</a></font><span
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                    style="background-color:rgb(204,204,204)"></span></span><span
                  style="color:rgb(192,0,0)"></span><span
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      <pre wrap="" class="moz-quote-pre">_______________________________________________
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