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<p>Dear Ioannis,</p>
<p>Have you tried providing this option to AreTomo2 on the relion
GUI using the "Other AreTomo2 arguments"?</p>
<p>Best wishes,</p>
<p>Sjors</p>
<p><br>
</p>
<div class="moz-cite-prefix">On 25/02/2025 09:49, Ioannis Skalidis
via 3dem wrote:<br>
</div>
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<br>
--<br>
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<div>Dear 3DEM,</div>
<div><br>
</div>
<div>I was wondering if anyone has an idea on how I would be
able to generate the Imod folder necessary to move to other
software for tomogram reconstruction, after I do tilt series
alignment with AreTomo in Relion 5. The standalone version of
AreTomo has the -OutImod command, but this cannot be included
as an additional argument when running it from within Relion
5. <br>
</div>
<div>Does anyone have a suggestion?</div>
<div><br>
</div>
<div>Thanks in advance,</div>
<div>Ioannis.</div>
<div><br>
</div>
<div>
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style="font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif;font-size:10pt"><span
style="color:rgb(102,102,102)">Dr. Ioannis Skalidis</span><span
style="color:gray"> </span><span
style="color:rgb(192,0,0)">| </span><span
style="color:rgb(102,102,102)">Structural Biochemist</span><span
style="color:gray"> </span><span
style="color:rgb(192,0,0)">| </span><span
style="color:rgb(102,102,102)">Twitter: <a
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target="_blank" moz-do-not-send="true">@imjohnskal</a></span><span
style="color:rgb(192,0,0)"> </span><span
style="color:rgb(192,0,0)">| </span><span
style="color:rgb(102,102,102)">Mobile: +30 698 807
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