<div dir="ltr">Hi Reza,<div><br></div><div>This problem can be solved by recompiling the library code in LibSrc. The following are the steps</div><div>1) open a linux terminal and go inside LibSrc/Util</div><div>2) run "make clean" followed by "make all"</div><div>3) go inside LibSrc/Mrcfile</div><div>4) run "make clean" followed by "make all"</div><div>5) recompile AreTomo3.</div><div><br></div><div>Please let me know if these steps fix the problem.</div><div><br></div><div>Best,</div><div>Shawn</div><div><br></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Thu, Jul 25, 2024 at 10:12 AM Reza Khayat <<a href="mailto:rkhayat@ccny.cuny.edu">rkhayat@ccny.cuny.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div class="msg573040409085557986">
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Hi,</div>
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We are getting the following error when compiling AreTomo3. The error occurs for a number of files being compiled. Any help would be appreciated:</div>
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/usr/bin/ld: /home/rkhayat/Applications/AreTomo3/LibSrc/Lib/libmrcfile.a(CSaveMainHeader.o): relocation R_X86_64_32 against symbol
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<code>__gxx_personality_v0@@CXXABI_1.3' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /home/rkhayat/Applications/AreTomo3/LibSrc/Lib/libmrcfile.a(CLoadImage.o):
relocation R_X86_64_32 against symbol </code></span>__gxx_personality_v0@@CXXABI_1.3' can not be used when making a PIE object; recompile with -fPIE</div>
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Bes</div>
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Reza Khayat, PhD</div>
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City College of New York</div>
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Associate Professor</div>
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Department of Chemistry and Biochemistry</div>
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Co-Director NIH G-RISE program</div>
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