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<p>Dear all,</p>
<p><br>
</p>
<p>as Steve points out, anyone is free to register in the list and
the wiki (<a class="moz-txt-link-freetext" href="https://urldefense.com/v3/__https://3demmethods.i2pc.es/index.php/Main_Page__;!!Mih3wA!A7l1tDeXP1DrwVye8Lo_0WY_WTm3Qk0vkLu5e9htfGureAK3jgPCQaUftdyGgg6iO2fp2fMGZvW2pbfjCQ$">https://3demmethods.i2pc.es/index.php/Main_Page</a>) and
post any mail. Still, Alex contribution is also welcome and I will
try to keep the wiki updated with this information.</p>
<p><br>
</p>
<p>Cheers, Carlos Oscar<br>
</p>
<p><br>
</p>
<div class="moz-cite-prefix">El 15/07/2024 a las 21:12, Alex Noble
escribió:<br>
</div>
<blockquote type="cite"
cite="mid:PH0PR14MB4296F97D54FE6D8581510A0DC0A12@PH0PR14MB4296.namprd14.prod.outlook.com">
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Hi Steve,</div>
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<br>
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Thanks. I hadn't heard of this resource from Carlos. I just
checked the past week of papers between our two collections and
see some in common and some not in common, so it looks like both
collections are useful.</div>
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<br>
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Best,</div>
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-Alex</div>
<hr style="display:inline-block;width:98%" tabindex="-1">
<div id="divRplyFwdMsg" dir="ltr"><font style="font-size:11pt"
face="Calibri, sans-serif" color="#000000"><b>From:</b>
Ludtke, Steven J. <a class="moz-txt-link-rfc2396E" href="mailto:sludtke@bcm.edu"><sludtke@bcm.edu></a><br>
<b>Sent:</b> Monday, July 15, 2024 2:46 PM<br>
<b>To:</b> Alex Noble <a class="moz-txt-link-rfc2396E" href="mailto:anoble@nysbc.org"><anoble@nysbc.org></a><br>
<b>Cc:</b> <a class="moz-txt-link-abbreviated" href="mailto:3dem@ncmir.ucsd.edu">3dem@ncmir.ucsd.edu</a> <a class="moz-txt-link-rfc2396E" href="mailto:3dem@ncmir.ucsd.edu"><3dem@ncmir.ucsd.edu></a><br>
<b>Subject:</b> Re: [3dem] New cryoEM papers (#cryoem_papers)</font>
<div> </div>
</div>
<div style="line-break:after-white-space">
<div>Hi Alex,</div>
<div>maybe you aren’t aware, but Carlos-Oscar started a separate
mailing list for exactly this purpose, with each post a
separate paper:</div>
<div><a
href="https://urldefense.com/v3/__https://listas.csic.es/cnb/wws/arc/3demmethods__;!!Mih3wA!EtPxs8zW6kAWatatcqvmOcAaJDFLFuk1JiHE0yvqwmgPm-DZR2napEplebUtZryyWJudqQD4SzVtSXgJ2A$"
moz-do-not-send="true">https://listas.csic.es/cnb/wws/arc/3demmethods</a></div>
<div><br>
</div>
<div>I’ve been following it for years, and he does a nice job of
fining good methods papers. I haven’t seen others posting, but
since it’s a mailing list I can’t see anything preventing it
either...</div>
<div><br>
</div>
<div>
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<div><font face="Courier New"><span
style="font-size:14px">---</span></font></div>
<div><font face="Courier New"><span
style="font-size:14px">Steven Ludtke, Ph.D.
<a class="moz-txt-link-rfc2396E" href="mailto:sludtke@bcm.edu"><sludtke@bcm.edu></a> Baylor College of Medicine<br>
Charles C. Bell Jr., Professor of
Structural Biology Dept. of
Biochemistry <br>
Deputy Director, Advanced
Technology Cores and
Molecular Pharmacology<br>
Academic Director, CryoEM Core<br>
Co-Director CIBR Center<br>
</span></font><br>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
<div><br>
<blockquote type="cite">
<div>On Jul 15, 2024, at 2:39 PM, Alex Noble
<a class="moz-txt-link-rfc2396E" href="mailto:anoble@nysbc.org"><anoble@nysbc.org></a> wrote:</div>
<br class="x_Apple-interchange-newline">
<div><font
style="font-family:Helvetica; font-style:normal; font-variant-caps:normal; font-weight:400; letter-spacing:normal; orphans:auto; text-align:start; text-indent:0px; text-transform:none; white-space:normal; widows:auto; word-spacing:0px; text-decoration:none"
size="2"><b>***CAUTION:*** This email is not from a BCM
Source. Only click links or open attachments you know
are safe.</b></font><span
style="font-family:Helvetica; font-size:12px; font-style:normal; font-variant-caps:normal; font-weight:400; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; text-decoration:none; float:none; display:inline!important"></span>
<hr
style="font-family:Helvetica; font-size:12px; font-style:normal; font-variant-caps:normal; font-weight:400; letter-spacing:normal; orphans:auto; text-align:start; text-indent:0px; text-transform:none; white-space:normal; widows:auto; word-spacing:0px; text-decoration:none">
<span
style="font-style:normal; font-variant-caps:normal; font-weight:400; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; text-decoration:none; font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">Hi
cool people,</span><span
style="font-family:Helvetica; font-size:12px; font-style:normal; font-variant-caps:normal; font-weight:400; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; text-decoration:none; float:none; display:inline!important"></span>
<div
style="font-style:normal; font-variant-caps:normal; font-weight:400; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; text-decoration:none; font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
<br>
</div>
<div
style="font-style:normal; font-variant-caps:normal; font-weight:400; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; text-decoration:none; font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
I've been finding new cryoEM papers that are interesting
to me (methods/new tech, machine learning,
cryoFIB/SEM-ET, etc.; typically no biology-focused
papers) for our internal Slack channel for years and
decided to share them with the community as well. Many
papers fall through the cracks, so I think it would be
good to have the whole cryoEM community on the same
page. Hopefully it will make the community more
productive and speed up the pace of developments.=)</div>
<div
style="font-style:normal; font-variant-caps:normal; font-weight:400; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; text-decoration:none; font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
<br>
</div>
<div
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There used to be a twitter bot that (<a
href="https://urldefense.com/v3/__https://x.com/cryoem_papers__;!!Mih3wA!HPvc31Hr1YVapoG6ycZEQD84QfpJl9JVWlLYzSWoNyJsAKXU2A5b3J4k6Y5ILofe5XcofQHgtKv2MOaadg$"
id="OWA20ca7e5d-600d-95a2-7160-370d5e81d410"
class="x_OWAAutoLink"
title="https://x.com/cryoem_papers"
moz-do-not-send="true">@cryoem_papers</a>) that did
this work. I'll add #cryoem_papers to this recurrent
email so it's easy for you to filter them as you wish.</div>
<div
style="font-style:normal; font-variant-caps:normal; font-weight:400; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; text-decoration:none; font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
<br>
</div>
<div
style="font-style:normal; font-variant-caps:normal; font-weight:400; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; text-decoration:none; font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
I'll aim to post new papers every Monday. Here's the
first batch covering the past 2 weeks:</div>
<div
style="font-style:normal; font-variant-caps:normal; font-weight:400; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; text-decoration:none; font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
<br>
</div>
<ul
style="font-family:Helvetica; font-size:12px; font-style:normal; font-variant-caps:normal; font-weight:400; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; text-decoration:none">
<li
style="font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
<div>CryoViT: Efficient Segmentation of Cryogenic
Electron Tomograms with Vision Foundation Models<br>
<a
href="https://urldefense.com/v3/__https://www.biorxiv.org/content/10.1101/2024.06.26.600701v1__;!!Mih3wA!HPvc31Hr1YVapoG6ycZEQD84QfpJl9JVWlLYzSWoNyJsAKXU2A5b3J4k6Y5ILofe5XcofQHgtKuohK-LOA$"
id="OWA4acf074a-7ee4-8bb4-14f5-cb69b1c4d559"
class="x_OWAAutoLink" moz-do-not-send="true">https://www.biorxiv.org/content/10.1101/2024.06.26.600701v1</a></div>
</li>
<li
style="font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
<div>Accurate size-based protein localization from
cryo-ET tomograms<br>
<a
href="https://urldefense.com/v3/__https://www.sciencedirect.com/science/article/pii/S2590152424000096__;!!Mih3wA!HPvc31Hr1YVapoG6ycZEQD84QfpJl9JVWlLYzSWoNyJsAKXU2A5b3J4k6Y5ILofe5XcofQHgtKsRSTmqcQ$"
id="OWAc4020475-30b2-6587-73c0-30b188cf05a6"
class="x_OWAAutoLink" moz-do-not-send="true">https://www.sciencedirect.com/science/article/pii/S2590152424000096</a></div>
</li>
<li
style="font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
<div>Accurate Prediction of Protein Structural
Flexibility by Deep Learning Integrating Intricate
Atomic Structures and Cryo-EM Density Information<br>
<a
href="https://urldefense.com/v3/__https://www.nature.com/articles/s41467-024-49858-x__;!!Mih3wA!HPvc31Hr1YVapoG6ycZEQD84QfpJl9JVWlLYzSWoNyJsAKXU2A5b3J4k6Y5ILofe5XcofQHgtKvoT7cSNw$"
id="OWA3da89294-c457-b39f-e216-41323c4edc11"
class="x_OWAAutoLink" moz-do-not-send="true">https://www.nature.com/articles/s41467-024-49858-x</a></div>
</li>
<li
style="font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
<div>OPUS-TOMO: Deep Learning Framework for Structural
Heterogeneity Analysis in Cryo-electron Tomography</div>
<div><a
href="https://urldefense.com/v3/__https://www.biorxiv.org/content/10.1101/2024.06.30.601442v1__;!!Mih3wA!HPvc31Hr1YVapoG6ycZEQD84QfpJl9JVWlLYzSWoNyJsAKXU2A5b3J4k6Y5ILofe5XcofQHgtKt1ojRpCw$"
id="OWAacc40924-489a-a674-835d-c7dc7513fdd9"
class="x_OWAAutoLink" moz-do-not-send="true">https://www.biorxiv.org/content/10.1101/2024.06.30.601442v1</a></div>
</li>
<li
style="font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
<div>Frontiers in integrative structural biology:
modeling disordered proteins and utilizing in situ
data</div>
<div><a
href="https://urldefense.com/v3/__https://arxiv.org/abs/2407.00566__;!!Mih3wA!HPvc31Hr1YVapoG6ycZEQD84QfpJl9JVWlLYzSWoNyJsAKXU2A5b3J4k6Y5ILofe5XcofQHgtKsbFlkRLQ$"
id="OWA239e0481-2e39-8e7c-60e1-173ae7a7d140"
class="x_OWAAutoLink" moz-do-not-send="true">https://arxiv.org/abs/2407.00566</a></div>
</li>
<li
style="font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
<div>Direct Measurement of the Critical Cooling Rate
for the Vitrification of Water</div>
<div><a
href="https://urldefense.com/v3/__https://arxiv.org/abs/2407.01087__;!!Mih3wA!HPvc31Hr1YVapoG6ycZEQD84QfpJl9JVWlLYzSWoNyJsAKXU2A5b3J4k6Y5ILofe5XcofQHgtKudON1_dg$"
id="OWAb0628469-c032-df2a-74ab-18151abdd9c3"
class="x_OWAAutoLink" moz-do-not-send="true">https://arxiv.org/abs/2407.01087</a></div>
</li>
<li
style="font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
<div>DiffFit: Visually-Guided Differentiable Fitting
of Molecule Structures to a Cryo-EM Map</div>
<div><a
href="https://urldefense.com/v3/__https://arxiv.org/abs/2404.02465__;!!Mih3wA!HPvc31Hr1YVapoG6ycZEQD84QfpJl9JVWlLYzSWoNyJsAKXU2A5b3J4k6Y5ILofe5XcofQHgtKsAc0GjxA$"
id="OWAf1f975fa-ec0e-6b0d-e8b5-3358a3804308"
class="x_OWAAutoLink" moz-do-not-send="true">https://arxiv.org/abs/2404.02465</a></div>
</li>
<li
style="font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
<div>Einstein from Noise: Statistical Analysis</div>
<div><a
href="https://urldefense.com/v3/__https://www.biorxiv.org/content/10.1101/2024.07.06.602366v1__;!!Mih3wA!HPvc31Hr1YVapoG6ycZEQD84QfpJl9JVWlLYzSWoNyJsAKXU2A5b3J4k6Y5ILofe5XcofQHgtKvOHxAOOQ$"
id="OWA2eb72f8a-c0f4-de0f-b202-6cde95b7d36d"
class="x_OWAAutoLink" moz-do-not-send="true">https://www.biorxiv.org/content/10.1101/2024.07.06.602366v1</a></div>
</li>
<li
style="font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
<div>Advances in cryo-ET data processing: meeting the
demands of visual proteomics</div>
<div><a
href="https://urldefense.com/v3/__https://www.sciencedirect.com/science/article/pii/S0959440X24000885__;!!Mih3wA!HPvc31Hr1YVapoG6ycZEQD84QfpJl9JVWlLYzSWoNyJsAKXU2A5b3J4k6Y5ILofe5XcofQHgtKuZU9NwEA$"
id="OWAd517611e-5f78-30ea-8e83-b5b56b34e2cd"
class="x_OWAAutoLink" moz-do-not-send="true">https://www.sciencedirect.com/science/article/pii/S0959440X24000885</a></div>
</li>
<li
style="font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
<div>Expanding insights from in situ cryo-EM</div>
<div><a
href="https://urldefense.com/v3/__https://www.sciencedirect.com/science/article/abs/pii/S0959440X2400112X__;!!Mih3wA!HPvc31Hr1YVapoG6ycZEQD84QfpJl9JVWlLYzSWoNyJsAKXU2A5b3J4k6Y5ILofe5XcofQHgtKsKNZgq3w$"
id="OWAf1f15a88-ce1d-0f28-d49f-461374b690b0"
class="x_OWAAutoLink" moz-do-not-send="true">https://www.sciencedirect.com/science/article/abs/pii/S0959440X2400112X</a></div>
</li>
<li
style="font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
<div>High-resolution real-space reconstruction of
cryo-EM structures using a neural field network</div>
<div><a
href="https://urldefense.com/v3/__https://www.nature.com/articles/s42256-024-00870-2__;!!Mih3wA!HPvc31Hr1YVapoG6ycZEQD84QfpJl9JVWlLYzSWoNyJsAKXU2A5b3J4k6Y5ILofe5XcofQHgtKsLNiVZcQ$"
id="OWAedef2c38-223b-f28b-736c-bc2f3e8237af"
class="x_OWAAutoLink" moz-do-not-send="true">https://www.nature.com/articles/s42256-024-00870-2</a></div>
</li>
<li
style="font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
<div>Nanobody-assisted cryoEM structural determination
for challenging proteins</div>
<div><a
href="https://urldefense.com/v3/__https://www.cell.com/trends/biochemical-sciences/abstract/S0968-0004(24)00136-1__;!!Mih3wA!HPvc31Hr1YVapoG6ycZEQD84QfpJl9JVWlLYzSWoNyJsAKXU2A5b3J4k6Y5ILofe5XcofQHgtKuCSE_NrQ$"
id="OWA28a994e7-d239-113e-1333-9af2ded2cf2f"
class="x_OWAAutoLink" moz-do-not-send="true">https://www.cell.com/trends/biochemical-sciences/abstract/S0968-0004(24)00136-1</a></div>
</li>
<li
style="font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
<div>De novo atomic protein structure modeling for
cryoEM density maps using 3D transformer and HMM<br>
<a
href="https://urldefense.com/v3/__https://www.nature.com/articles/s41467-024-49647-6__;!!Mih3wA!HPvc31Hr1YVapoG6ycZEQD84QfpJl9JVWlLYzSWoNyJsAKXU2A5b3J4k6Y5ILofe5XcofQHgtKv7UOYzog$"
id="OWA16339151-c54e-8d5a-ee97-ff141447b040"
class="x_OWAAutoLink" moz-do-not-send="true">https://www.nature.com/articles/s41467-024-49647-6</a></div>
</li>
<li
style="font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
<div>Training-free CryoET Tomogram Segmentation</div>
<div><a
href="https://urldefense.com/v3/__https://www.arxiv.org/abs/2407.06833__;!!Mih3wA!HPvc31Hr1YVapoG6ycZEQD84QfpJl9JVWlLYzSWoNyJsAKXU2A5b3J4k6Y5ILofe5XcofQHgtKuwOMxByw$"
id="OWA1d827ec3-12bc-038c-9225-9bd66faeb59b"
class="x_OWAAutoLink" moz-do-not-send="true">https://www.arxiv.org/abs/2407.06833</a></div>
</li>
<li
style="font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
<div>Improving Ab-Initio Cryo-EM Reconstruction with
Semi-Amortized Pose Inference</div>
<div><a
href="https://urldefense.com/v3/__https://arxiv.org/abs/2406.10455v1__;!!Mih3wA!HPvc31Hr1YVapoG6ycZEQD84QfpJl9JVWlLYzSWoNyJsAKXU2A5b3J4k6Y5ILofe5XcofQHgtKuSxH98uw$"
id="OWA8292bb57-c9e3-fb28-7dc8-b90079dd0a29"
class="x_OWAAutoLink" moz-do-not-send="true">https://arxiv.org/abs/2406.10455v1</a></div>
</li>
<li
style="font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
<div>CryoJAM: Automating Protein Homolog Fitting in
Medium Resolution Cryo-EM Density Maps</div>
<div><a
href="https://urldefense.com/v3/__https://www.biorxiv.org/content/10.1101/2024.07.10.602952v1__;!!Mih3wA!HPvc31Hr1YVapoG6ycZEQD84QfpJl9JVWlLYzSWoNyJsAKXU2A5b3J4k6Y5ILofe5XcofQHgtKtwRefPZA$"
id="OWAb658aa9c-22e4-64ad-4f97-bd86fbb2e4eb"
class="x_OWAAutoLink" moz-do-not-send="true">https://www.biorxiv.org/content/10.1101/2024.07.10.602952v1</a></div>
</li>
<li
style="font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
<div>Ais: streamlining segmentation of cryo-electron
tomography datasets<br>
<a
href="https://urldefense.com/v3/__https://elifesciences.org/reviewed-preprints/98552__;!!Mih3wA!HPvc31Hr1YVapoG6ycZEQD84QfpJl9JVWlLYzSWoNyJsAKXU2A5b3J4k6Y5ILofe5XcofQHgtKsVogSXzQ$"
id="OWA027bbc43-4761-edd5-68bc-57c3bcbd8da6"
class="x_OWAAutoLink" moz-do-not-send="true">https://elifesciences.org/reviewed-preprints/98552</a></div>
</li>
<li
style="font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
<div>Cryo-electron tomography pipeline for plasma
membranes</div>
<div><a
href="https://urldefense.com/v3/__https://www.biorxiv.org/content/10.1101/2024.06.27.600657v1__;!!Mih3wA!HPvc31Hr1YVapoG6ycZEQD84QfpJl9JVWlLYzSWoNyJsAKXU2A5b3J4k6Y5ILofe5XcofQHgtKth_101CQ$"
id="OWAc0b99d46-7b15-3f96-8e4a-086532766127"
class="x_OWAAutoLink" moz-do-not-send="true">https://www.biorxiv.org/content/10.1101/2024.06.27.600657v1</a></div>
</li>
<li
style="font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
<div>DeepOrientation: Deep Orientation Estimation of
Macromolecules in Cryo-electron tomography</div>
<div><a
href="https://urldefense.com/v3/__https://www.biorxiv.org/content/10.1101/2024.07.12.603241v1__;!!Mih3wA!HPvc31Hr1YVapoG6ycZEQD84QfpJl9JVWlLYzSWoNyJsAKXU2A5b3J4k6Y5ILofe5XcofQHgtKsFGRQwPA$"
id="OWA2486f862-2f44-1c48-4eb5-9e1b6a25bb14"
class="x_OWAAutoLink" moz-do-not-send="true">https://www.biorxiv.org/content/10.1101/2024.07.12.603241v1</a></div>
</li>
<li
style="font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
<div>Graphene in cryo-EM specimen optimization</div>
<div><a
href="https://urldefense.com/v3/__https://www.sciencedirect.com/science/article/pii/S0959440X24000502__;!!Mih3wA!HPvc31Hr1YVapoG6ycZEQD84QfpJl9JVWlLYzSWoNyJsAKXU2A5b3J4k6Y5ILofe5XcofQHgtKvyMFyQlw$"
id="OWA359b49cf-380b-353a-2323-2eb4a385c766"
class="x_OWAAutoLink" moz-do-not-send="true">https://www.sciencedirect.com/science/article/pii/S0959440X24000502</a></div>
</li>
<li
style="font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
<div>FakET: Simulating Cryo-Electron Tomograms with
Neural Style Transfer</div>
<div><a
href="https://urldefense.com/v3/__https://arxiv.org/abs/2304.02011__;!!Mih3wA!HPvc31Hr1YVapoG6ycZEQD84QfpJl9JVWlLYzSWoNyJsAKXU2A5b3J4k6Y5ILofe5XcofQHgtKt4snzGwQ$"
id="OWAc853e11d-1a04-36af-0a2b-889248813917"
class="x_OWAAutoLink" moz-do-not-send="true">https://arxiv.org/abs/2304.02011</a></div>
</li>
<li
style="font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
<div>Vox-UDA: Voxel-wise Unsupervised Domain
Adaptation for Cryo-Electron Subtomogram
Segmentation with Denoised Pseudo Labeling</div>
<div><a
href="https://urldefense.com/v3/__https://arxiv.org/abs/2406.18610__;!!Mih3wA!HPvc31Hr1YVapoG6ycZEQD84QfpJl9JVWlLYzSWoNyJsAKXU2A5b3J4k6Y5ILofe5XcofQHgtKsLmJzU3g$"
id="OWA43909e27-d370-d1cd-6bc7-df8191646d63"
class="x_OWAAutoLink" moz-do-not-send="true">https://arxiv.org/abs/2406.18610</a></div>
</li>
<li
style="font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
<div>Visualizing the translation landscape in human
cells at high resolution</div>
<div><a
href="https://urldefense.com/v3/__https://www.biorxiv.org/content/10.1101/2024.07.02.601723v1__;!!Mih3wA!HPvc31Hr1YVapoG6ycZEQD84QfpJl9JVWlLYzSWoNyJsAKXU2A5b3J4k6Y5ILofe5XcofQHgtKuurcX15w$"
id="OWA0e7f5916-e7f3-6e5b-625b-dddde29120f4"
class="x_OWAAutoLink" moz-do-not-send="true">https://www.biorxiv.org/content/10.1101/2024.07.02.601723v1</a></div>
</li>
</ul>
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style="font-style:normal; font-variant-caps:normal; font-weight:400; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; text-decoration:none; font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
<br>
</div>
<div
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Best wishes,</div>
<div
style="font-style:normal; font-variant-caps:normal; font-weight:400; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; text-decoration:none; font-family:Aptos,Aptos_EmbeddedFont,Aptos_MSFontService,Calibri,Helvetica,sans-serif; font-size:12pt">
-Alex Noble</div>
<div
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SEMC/NYSBC</div>
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X:<span class="x_Apple-converted-space"> </span><u><a
href="https://urldefense.com/v3/__https://x.com/alexjamesnoble__;!!Mih3wA!HPvc31Hr1YVapoG6ycZEQD84QfpJl9JVWlLYzSWoNyJsAKXU2A5b3J4k6Y5ILofe5XcofQHgtKvYuXYvdg$"
id="OWAabb3cc11-e308-85bc-0dcf-af777310aed8"
class="x_OWAAutoLink"
title="https://x.com/alexjamesnoble"
moz-do-not-send="true">@alexjamesnoble</a></u></div>
<span
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<pre class="moz-quote-pre" wrap="">_______________________________________________
3dem mailing list
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<a class="moz-txt-link-freetext" href="https://mail.ncmir.ucsd.edu/mailman/listinfo/3dem">https://mail.ncmir.ucsd.edu/mailman/listinfo/3dem</a>
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