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<b>Dear All,</b>
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<div>I recently tried reading the defects from the .gain file of our Falcon4i.</div>
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<div>However, the xml embedded in the .gain reads as:</div>
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<div><span class="ui-provider a b c d e f g h i j k l m n o p q r s t u v w x y z ab ac ae af ag ah ai aj ak" dir="ltr"><defects><!-- Defects file not present --></defects></span></div>
<div><span class="ui-provider a b c d e f g h i j k l m n o p q r s t u v w x y z ab ac ae af ag ah ai aj ak" dir="ltr"><br>
</span></div>
<div><span class="ui-provider a b c d e f g h i j k l m n o p q r s t u v w x y z ab ac ae af ag ah ai aj ak" dir="ltr">Is the is bug in the software? Maybe it is not yet implemented by TFS?</span></div>
<div><span class="ui-provider a b c d e f g h i j k l m n o p q r s t u v w x y z ab ac ae af ag ah ai aj ak" dir="ltr"><br>
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<div>Are there other ways to extract it?</div>
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<div>I know the .gain zeros are the defects, but is this not an issue if you take the reciprocal?</div>
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<div>1/0 = ðŸ¤¯</div>
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<div>We’re trying to figure out which software does best in processing .eer files of tomograms.</div>
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<div>(Low dose; ca 3 e/Ã…2)</div>
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<div>Relion looks perfect but does not produce 1/2 stacks for denoising.</div>
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<div>Warp and MC3 produce 1/2 stacks, but I can see artifacts in the pixel substitution.</div>
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<div>Thanks for your help!</div>
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<div>Philipp.</div>
<div dir="ltr" style="mso-line-height-rule:exactly;-webkit-text-size-adjust:100%;font-size:1px;direction:ltr;"><table cellpadding="0" cellspacing="0" border="0" style="width:100%;font-size:1px;"><tr style="font-size:0;"><td align="left" style="vertical-align:top;"><table cellpadding="0" cellspacing="0" border="0" style="font-size:0;"><tr style="font-size:0;"><td align="left" style="padding:0;vertical-align:top;"><table cellpadding="0" cellspacing="0" border="0" style="width:100%;font-size:0;color:#005CA8;font-style:normal;font-weight:400;white-space:nowrap;"><tr style="font-size:14.67px;"><td align="left" style="vertical-align:top;font-family:Arial;">           <span style="font-family:remialcxesans;font-size:1px;color:#FFFFFF;line-height:1px;">​</span><br /></td></tr><tr style="font-size:14.67px;font-weight:700;"><td align="left" style="vertical-align:top;font-family:Arial;">Philipp Sebastian Erdmann</td></tr><tr style="font-size:0;"><td align="left" style="vertical-align:top;"><table cellpadding="0" cellspacing="0" border="0" style="font-size:0;color:#005CA8;font-style:normal;font-weight:400;white-space:nowrap;"><tr style="font-size:14.67px;"><td align="left" style="vertical-align:top;font-family:Arial;">Research Group Leader</td></tr><tr style="font-size:0;"><td align="left" style="vertical-align:top;"><table cellpadding="0" cellspacing="0" border="0" style="font-size:0;color:#005CA8;font-style:normal;font-weight:400;white-space:nowrap;"><tr style="font-size:14.67px;"><td align="left" style="vertical-align:top;font-family:Arial;"><span style="text-decoration:underline;"><a href="https://urldefense.com/v3/__https://humantechnopole.it/en/research-groups/erdmann-group/__;!!Mih3wA!Cen_KzSXfQPgE9bJjRgu0iKxL-eaaIQFg-LOnFqxsjzOhNqCky6kT1AdE67gqJixPfoJKjjxCgwErbWqbL7Gz5S7r7Z9$" target="_blank" id="LPlnk689713" style="text-decoration:underline;color:#005CA8;">Erdmann Group, </a></span><br /></td><td align="left" style="vertical-align:top;font-family:Arial;">Structural Biology Research Centre</td></tr></table></td></tr></table></td></tr></table></td></tr><tr style="font-size:14.67px;color:#005CA8;font-style:normal;font-weight:400;white-space:nowrap;"><td align="left" style="padding:13px 0 0;vertical-align:top;font-family:Arial;"><span style="font-weight:700;">Human Technopole</span><br />Palazzo Italia<br />Viale Rita Levi Montalcini, 1<br />20157 Milan, Italy</td></tr><tr style="font-size:0;"><td align="left" style="padding:13px 0 0;vertical-align:top;"><table cellpadding="0" cellspacing="0" border="0" style="width:100%;font-size:0;color:#005CA8;font-style:normal;font-weight:400;white-space:nowrap;"><tr style="font-size:14.67px;"><td align="left" style="vertical-align:top;font-family:Arial;">M. +39 <a href="tel:3452453710" target="_blank" id="LPlnk689713" style="text-decoration:none;color:#005CA8;"><span style="text-decoration:underline;">3452453710</span></a></td></tr><tr style="font-size:14.67px;"><td align="left" style="vertical-align:top;font-family:Arial;">E. <a href="mailto:philipp.erdmann@fht.org" target="_blank" id="LPlnk689713" style="text-decoration:none;color:#005CA8;"><span style="text-decoration:underline;">philipp.erdmann@fht.org</span></a></td></tr></table></td></tr><tr style="font-size:0;"><td style="padding:13px 0 0;"> </td></tr><tr style="font-size:0;"><td align="left" style="padding:13px 0 0;vertical-align:top;"><table cellpadding="0" cellspacing="0" border="0" style="font-size:0;"><tr style="font-size:0;"><td align="left" style="vertical-align:top;"><table cellpadding="0" cellspacing="0" border="0" style="font-size:0;line-height:normal;"><tr style="font-size:0;"><td align="left" style="padding:0 10px 0 0;vertical-align:top;"><a href="https://urldefense.com/v3/__https://www.facebook.com/htechnopole__;!!Mih3wA!Cen_KzSXfQPgE9bJjRgu0iKxL-eaaIQFg-LOnFqxsjzOhNqCky6kT1AdE67gqJixPfoJKjjxCgwErbWqbL7Gz_nSu4FY$" target="_blank" id="LPlnk689713" style="text-decoration:none;"><img src="cid:image112083.png@B7AB0679.990E044E" border="0" alt="" style="font-size:0;" /></a></td></tr></table></td><td align="left" style="vertical-align:top;"><table cellpadding="0" cellspacing="0" border="0" style="font-size:0;line-height:normal;"><tr style="font-size:0;"><td align="left" style="padding:0 10px 0 0;vertical-align:top;"><a href="https://urldefense.com/v3/__https://twitter.com/humantechnopole__;!!Mih3wA!Cen_KzSXfQPgE9bJjRgu0iKxL-eaaIQFg-LOnFqxsjzOhNqCky6kT1AdE67gqJixPfoJKjjxCgwErbWqbL7Gz78cWKM5$" target="_blank" id="LPlnk689713" style="text-decoration:none;"><img src="cid:image847006.png@38DB6640.EF47B9B1" border="0" alt="" style="font-size:0;" /></a></td></tr></table></td><td align="left" style="vertical-align:top;"><table cellpadding="0" cellspacing="0" border="0" style="font-size:0;line-height:normal;"><tr style="font-size:0;"><td align="left" style="padding:0 10px 0 0;vertical-align:top;"><a href="https://urldefense.com/v3/__https://www.linkedin.com/company/htechnopole__;!!Mih3wA!Cen_KzSXfQPgE9bJjRgu0iKxL-eaaIQFg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