<div dir="ltr"><p style="margin:0in"><font face="arial, sans-serif">Dear Colleagues,</font></p><p style="margin:0in"><font face="arial, sans-serif"> </font></p><p style="margin:0in"><font face="arial, sans-serif">The Phenix developers will be holding a day-long satellite workshop on July 29th, prior to the ACA meeting in Portland, Oregon. This Phenix user workshop will focus on using predicted models for crystallography and cryo-EM.</font></p><p style="margin:0in"><font face="arial, sans-serif"> </font></p><p style="margin:0in"><font face="arial, sans-serif">The format of the workshop will be demos of the use of Phenix programs combined with slides to explain the theory. We expect an interactive meeting where attendees can ask questions for the Phenix team to answer. </font><span style="font-family:arial,sans-serif">Topics will cover aspects of macromolecular structure determination in Phenix.</span></p><p style="margin:0in"><font face="arial, sans-serif"> </font></p><p style="margin:0in"><font face="arial, sans-serif">For registration, see the ACA 2022 website: <a href="https://urldefense.proofpoint.com/v2/url?u=https-3A__www.acameeting.com_aca-2Dwk2&d=DwMFaQ&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=6AHgyx3wnT-sdQ7xHg8LSVYqumCD2PaN2861xPrcvIpaGrZKMGBknQdF6w_7Teyd&s=6pT4WVz_DsFs_xXF-4HuZH0F_gBcZtQhYuC1TcGKtXc&e=" target="_blank">https://www.acameeting.com/aca-wk2</a>. You need to register for the main meeting in order to participate in the workshop. This is an in-person workshop (no hybrid option).</font></p><p style="margin:0in"><font face="arial, sans-serif"> </font></p><p style="margin:0in"><font face="arial, sans-serif">Lecturers: Pavel Afonine, Dorothee Liebschner, Billy Poon, Tom Terwilliger</font></p><p style="margin:0in"><font face="arial, sans-serif"> </font></p><p style="margin:0in"><font face="arial, sans-serif">Looking forward to seeing you there!</font></p><p style="margin:0in"><font face="arial, sans-serif"><br></font></p><p style="margin:0in"><font face="arial, sans-serif">The Phenix team</font></p><p style="margin:0in;font-family:Arial;font-size:11pt"><br></p><p style="margin:0in;font-family:Arial;font-size:11pt"> </p><p style="margin:0in"><font face="arial, sans-serif">Detailed Program:</font></p><p style="margin:0in"><font face="arial, sans-serif"> </font></p><div style="direction:ltr"><font color="#888888"></font><font color="#888888"></font><table border="1" cellpadding="0" cellspacing="0" valign="top" title="" summary="" style="direction:ltr;border-collapse:collapse;border-style:solid;border-color:rgb(163,163,163);border-width:1pt"><tbody><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">8:00</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Welcome: Introduction to Phenix, Introduction to the GUI, set up Phenix</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">8:45</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Overview -- Strategy for X-ray or Cryo-EM structure determination using AlphaFold models (lecture)</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">9:15</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Predicting your structure with AlphaFold and trimming it with ProcessPredictedModel (demo)</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">9:45</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Solving an X-ray structure automatically by MR with PredictAndBuild (demo with pre-computed data)</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;background-color:rgb(243,243,243);vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">10:15</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;background-color:rgb(243,243,243);vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Break</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">10:45</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Evaluating X-ray data with Xtriage</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">11:00</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Xray refinement (lecture)</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">11:30</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Xray refinement with AlphaFold reference models (demo)</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;background-color:rgb(243,243,243);vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">12:00</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;background-color:rgb(243,243,243);vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Lunch</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">13:00</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Ligands (lecture & demo)</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">13:30</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Cryo-EM Data evaluation with Mtriage (short lecture & demo)</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">13:45</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.4229in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Cryo-EM map manipulations, map improvement with LocalAnisoSharpen and ResolveCryoEM (demo)</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;background-color:rgb(243,243,243);vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">14:30</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;background-color:rgb(243,243,243);vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Break</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">15:00</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Automatic cryo-EM map interpretation with PredictAndBuild (demo with pre-computed data)</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">15:30</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Cryo-EM refinement (lecture and demo)</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">16:00</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Model validation (lecture & demo)</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">16:30</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Q&A</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">16:50</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">finish: workshop survey and wrap up</font></p></td></tr></tbody></table></div><div><br></div>-- <br><div dir="ltr" class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div>Research Scientist, Molecular Biophysics and Integrated Bioimaging<br></div><div>Lawrence Berkeley National Laboratory</div><div>1 Cyclotron Road, M/S 33R0345</div><div>Berkeley, CA 94720</div><div>Tel: (510) 486-5709</div><div>Fax: (510) 486-5909</div><div>Web: <a href="https://urldefense.proofpoint.com/v2/url?u=https-3A__phenix-2Donline.org_&d=DwMFaQ&c=-35OiAkTchMrZOngvJPOeA&r=L7-zyQ-04fFCMRqzLIOnx7H0exGZHwIQe_wMPuY600I&m=6AHgyx3wnT-sdQ7xHg8LSVYqumCD2PaN2861xPrcvIpaGrZKMGBknQdF6w_7Teyd&s=ezm0e-PZ4ZvgSdqxZDd7JPnH_XabC7wA19qy9AkWxxQ&e=" style="color:rgb(17,85,204)" target="_blank">https://phenix-online.org</a></div></div></div></div>