<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Dear Jacopo,<div class=""><br class=""></div><div class="">Please try entering your EMDR search query as follows: </div><div class=""><br class=""></div><div class="">Fab AND resol:[* TO 6]</div><div class=""><br class=""></div><div class="">For the current week there are 117 EMDB entries.</div><div class=""><br class=""></div><div class=""><br class=""></div><div class="">If you are interested instead in all entries containing antibodies or their fragments with resolution 6 or better:</div><div class=""><br class=""></div><div class="">(Antibody or Fab) AND resol:[* TO 6] </div><div class=""><br class=""></div><div class="">yields 176 entries.</div><div class=""><br class=""></div><div class=""><br class=""></div><div class="">Additional hints about EMDR search query formulations can be found by clicking on the help (?) button and then “view more examples".</div><div class=""><br class=""></div><div class=""><br class=""></div><div class=""><div class="">Fab stands for antigen binding fragment, so "Fab fragment” is a bit redundant.</div><div class="">The latter is not routinely used by deposition authors, so will yield a much smaller search result.</div><div class=""><br class=""></div><div class="">I hope this helps and thanks once again for your feedback.</div><div class=""><br class=""></div><div class=""><br class=""></div></div><div class="">Cathy</div><div class=""><br class=""></div><div class=""><br class=""></div><div class=""><br class=""><div class="">
<div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div style="color: rgb(0, 0, 0); font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;">Cathy Lawson</div><div style="color: rgb(0, 0, 0); font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;">Institute for Quantitative Biomedicine</div><div style="color: rgb(0, 0, 0); font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;">Rutgers University</div><div style="color: rgb(0, 0, 0); font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;"><a href="mailto:cathy.lawson@rcsb.org" class="">cathy.lawson@rcsb.org</a></div><div style="color: rgb(0, 0, 0); font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;">848 445 5494</div><div style="color: rgb(0, 0, 0); font-family: Helvetica; font-size: 14px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class=""><br class=""></div><br class="Apple-interchange-newline"></div><br class="Apple-interchange-newline">
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<br class=""><div><blockquote type="cite" class=""><div class="">On Aug 26, 2019, at 8:48 AM, Cathy Lawson <<a href="mailto:cathy.lawson@rcsb.org" class="">cathy.lawson@rcsb.org</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div class="">Dear Jacopo,<br class=""><br class="">Thank you for your feedback on EMDR search. I agree that you should be getting more results for this particular query — we’ll look into it and will get back to you shortly.<br class=""><br class="">Best wishes,<br class=""><br class="">Cathy Lawson <br class="">EMDataResource<br class="">RCSB / Rutgers University<br class="">+1 848 445 5494<br class=""><br class=""><br class=""><blockquote type="cite" class="">On Aug 26, 2019, at 08:30, Jacopo Marino <<a href="mailto:jacopo.marino@psi.ch" class="">jacopo.marino@psi.ch</a>> wrote:<br class=""><br class="">Dear All,<br class=""><br class="">I'm wondering whether there is a more accurate way of searching for all cryo-EM structures obtained in complex with a Fab fragment than just typing "Fab fragment" in the search field on the EMDataResource database.<br class=""><br class="">Doing this way, I count only 17 structures below 6 A, which sounds little to me. Only 15 structures below 6 by searching for "Fab" only.<br class=""><br class="">Sorry if I've missed anything obvious. Any suggestion is very much appreciated.<br class=""><br class="">Thank you and best regards,<br class=""><br class="">Jacopo.<br class=""><br class="">-- <br class="">Dr. Jacopo Marino<br class="">Laboratory of Biomolecular Research<br class="">Paul Scherrer Institute<br class="">OFLB/005<br class="">5232 Villigen PSI, Switzerland<br class="">tel: +41 56 310 5484 (or +41 56 310 5777)<br class="">e-mail: <a href="mailto:jacopo.marino@psi.ch" class="">jacopo.marino@psi.ch</a><br class=""><br class="">_______________________________________________<br class="">3dem mailing list<br class=""><a href="mailto:3dem@ncmir.ucsd.edu" class="">3dem@ncmir.ucsd.edu</a><br class="">https://mail.ncmir.ucsd.edu/mailman/listinfo/3dem<br class=""></blockquote><br class=""></div></div></blockquote></div><br class=""></div></body></html>