[joel@localhost build]$ sudo make -j 8 Scanning dependencies of target copy_scripts Scanning dependencies of target relion_lib [ 0%] Built target copy_scripts [ 0%] [ 1%] [ 2%] [ 2%] [ 3%] [ 3%] [ 4%] Building CXX object src/apps/CMakeFiles/relion_lib.dir/__/CPlot2D.cpp.o Building CXX object src/apps/CMakeFiles/relion_lib.dir/__/assembly.cpp.o Building CXX object src/apps/CMakeFiles/relion_lib.dir/__/args.cpp.o [ 4%] Building CXX object src/apps/CMakeFiles/relion_lib.dir/__/autopicker.cpp.o Building CXX object src/apps/CMakeFiles/relion_lib.dir/__/backprojector.cpp.o Building CXX object src/apps/CMakeFiles/relion_lib.dir/__/autopicker_mpi.cpp.o Building CXX object src/apps/CMakeFiles/relion_lib.dir/__/complex.cpp.o Building CXX object src/apps/CMakeFiles/relion_lib.dir/__/ctf.cpp.o [ 5%] Building CXX object src/apps/CMakeFiles/relion_lib.dir/__/ctffind_runner.cpp.o [ 5%] Building CXX object src/apps/CMakeFiles/relion_lib.dir/__/ctffind_runner_mpi.cpp.o [ 6%] Building CXX object 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[ 70%] [ 70%] [ 70%] [ 71%] [ 72%] [ 72%] [ 72%] [ 72%] Building NVCC (Device) object src/apps/CMakeFiles/relion_gpu_util.dir/__/acc/cuda/./relion_gpu_util_generated_cuda_autopicker.cu.o Building NVCC (Device) object src/apps/CMakeFiles/relion_gpu_util.dir/__/acc/cuda/./relion_gpu_util_generated_cuda_backprojector.cu.o Building NVCC (Device) object src/apps/CMakeFiles/relion_gpu_util.dir/__/acc/cuda/./relion_gpu_util_generated_cuda_helper_functions.cu.o Building NVCC (Device) object src/apps/CMakeFiles/relion_gpu_util.dir/__/acc/cuda/cuda_kernels/./relion_gpu_util_generated_helper.cu.o Building NVCC (Device) object src/apps/CMakeFiles/relion_gpu_util.dir/__/acc/cuda/./relion_gpu_util_generated_cuda_benchmark_utils.cu.o Building NVCC (Device) object src/apps/CMakeFiles/relion_gpu_util.dir/__/acc/cuda/./relion_gpu_util_generated_cuda_projector.cu.o Building NVCC (Device) object src/apps/CMakeFiles/relion_gpu_util.dir/__/acc/cuda/./relion_gpu_util_generated_cuda_ml_optimiser.cu.o Building NVCC (Device) object src/apps/CMakeFiles/relion_gpu_util.dir/__/acc/cuda/./relion_gpu_util_generated_cuda_projector_plan.cu.o Scanning dependencies of target relion_gpu_util Linking CXX static library ../../lib/librelion_gpu_util.a [ 72%] Built target relion_gpu_util Scanning dependencies of target autopick_mpi Scanning dependencies of target autopick Scanning dependencies of target align_symmetry Scanning dependencies of target ctf_toolbox Scanning dependencies of target ctf_refine Scanning dependencies of target ctf_refine_mpi Scanning dependencies of target find_tiltpairs Scanning dependencies of target relion_gui_lib [ 73%] Building CXX object src/apps/CMakeFiles/find_tiltpairs.dir/find_tiltpairs.cpp.o [ 74%] [ 75%] [ 75%] [ 75%] Building CXX object src/apps/CMakeFiles/ctf_toolbox.dir/ctf_toolbox.cpp.o Building CXX object src/apps/CMakeFiles/ctf_refine.dir/ctf_refine.cpp.o [ 75%] [ 76%] Building CXX object src/apps/CMakeFiles/align_symmetry.dir/align_symmetry.cpp.o Building CXX object src/apps/CMakeFiles/autopick_mpi.dir/autopick_mpi.cpp.o Building CXX object src/apps/CMakeFiles/ctf_refine_mpi.dir/ctf_refine_mpi.cpp.o Building CXX object src/apps/CMakeFiles/autopick.dir/autopick.cpp.o [ 76%] Building CXX object src/apps/CMakeFiles/relion_gui_lib.dir/__/manualpicker.cpp.o Linking CXX executable ../../bin/relion_ctf_refine [ 76%] Built target ctf_refine [ 77%] Building CXX object src/apps/CMakeFiles/relion_gui_lib.dir/__/gui_entries.cpp.o Linking CXX executable ../../bin/relion_ctf_refine_mpi Linking CXX executable ../../bin/relion_autopick_mpi Linking CXX executable ../../bin/relion_autopick [ 77%] Built target ctf_refine_mpi Scanning dependencies of target flex_analyse [ 77%] Building CXX object src/apps/CMakeFiles/flex_analyse.dir/flex_analyse.cpp.o [ 77%] Built target autopick_mpi Scanning dependencies of target flex_analyse_mpi [ 78%] Building CXX object src/apps/CMakeFiles/flex_analyse_mpi.dir/flex_analyse_mpi.cpp.o [ 78%] Built target autopick Scanning dependencies of target helix_toolbox [ 78%] Building CXX object src/apps/CMakeFiles/helix_toolbox.dir/helix_toolbox.cpp.o [ 78%] Building CXX object src/apps/CMakeFiles/relion_gui_lib.dir/__/gui_jobwindow.cpp.o Scanning dependencies of target image_handler [ 79%] Building CXX object src/apps/CMakeFiles/image_handler.dir/image_handler.cpp.o Linking CXX executable ../../bin/relion_find_tiltpairs Linking CXX executable ../../bin/relion_ctf_toolbox [ 79%] Built target find_tiltpairs [ 80%] Building CXX object src/apps/CMakeFiles/relion_gui_lib.dir/__/gui_mainwindow.cpp.o [ 80%] Built target ctf_toolbox [ 80%] Building CXX object src/apps/CMakeFiles/relion_gui_lib.dir/__/displayer.cpp.o Linking CXX executable ../../bin/relion_align_symmetry [ 80%] Built target align_symmetry [ 81%] Building CXX object src/apps/CMakeFiles/relion_gui_lib.dir/__/Healpix_2.15a/cxxutils.cc.o Linking CXX executable ../../bin/relion_flex_analyse Linking CXX executable ../../bin/relion_flex_analyse_mpi [ 81%] Built target flex_analyse [ 81%] Building CXX object src/apps/CMakeFiles/relion_gui_lib.dir/__/Healpix_2.15a/healpix_base.cc.o [ 81%] Built target flex_analyse_mpi Scanning dependencies of target localsym [ 81%] Building CXX object src/apps/CMakeFiles/localsym.dir/localsym.cpp.o Scanning dependencies of target localsym_mpi [ 82%] Building CXX object src/apps/CMakeFiles/localsym_mpi.dir/localsym_mpi.cpp.o Scanning dependencies of target mask_create Scanning dependencies of target motion_refine Scanning dependencies of target motion_refine_mpi [ 82%] Linking CXX executable ../../bin/relion_localsym Building CXX object src/apps/CMakeFiles/mask_create.dir/mask_create.cpp.o [ 83%] Building CXX object src/apps/CMakeFiles/motion_refine.dir/motion_refine.cpp.o [ 83%] Building CXX object src/apps/CMakeFiles/motion_refine_mpi.dir/motion_refine_mpi.cpp.o [ 83%] Built target localsym Scanning dependencies of target motion_stats [ 84%] Building CXX object src/apps/CMakeFiles/motion_stats.dir/motion_stats.cpp.o Linking CXX executable ../../bin/relion_helix_toolbox [ 84%] Built target helix_toolbox Scanning dependencies of target mrc2vtk [ 84%] Building CXX object src/apps/CMakeFiles/mrc2vtk.dir/mrc2vtk.cpp.o Linking CXX executable ../../bin/relion_localsym_mpi [ 84%] Built target localsym_mpi Scanning dependencies of target particle_polish Linking CXX executable ../../bin/relion_motion_stats [ 85%] Building CXX object src/apps/CMakeFiles/particle_polish.dir/particle_polish.cpp.o Linking CXX executable ../../bin/relion_motion_refine [ 85%] Built target motion_stats Scanning dependencies of target particle_polish_mpi [ 85%] Building CXX object src/apps/CMakeFiles/particle_polish_mpi.dir/particle_polish_mpi.cpp.o [ 85%] Built target motion_refine Scanning dependencies of target particle_reposition [ 86%] Building CXX object src/apps/CMakeFiles/particle_reposition.dir/particle_reposition.cpp.o Linking CXX executable ../../bin/relion_motion_refine_mpi Linking CXX executable ../../bin/relion_image_handler [ 86%] Built target image_handler [ 86%] Scanning dependencies of target particle_sort Built target motion_refine_mpi Scanning dependencies of target particle_sort_mpi [ 86%] Building CXX object src/apps/CMakeFiles/particle_sort.dir/particle_sort.cpp.o [ 87%] Building CXX object src/apps/CMakeFiles/particle_sort_mpi.dir/particle_sort_mpi.cpp.o Linking CXX executable ../../bin/relion_mask_create [ 87%] Built target mask_create Scanning dependencies of target particle_symmetry_expand [ 87%] Building CXX object src/apps/CMakeFiles/particle_symmetry_expand.dir/particle_symmetry_expand.cpp.o Linking CXX executable ../../bin/relion_particle_sort Linking CXX executable ../../bin/relion_particle_polish Linking CXX executable ../../bin/relion_mrc2vtk [ 87%] Built target particle_sort Linking CXX executable ../../bin/relion_particle_polish_mpi Scanning dependencies of target postprocess [ 87%] Building CXX object src/apps/CMakeFiles/postprocess.dir/postprocess.cpp.o [ 87%] Built target mrc2vtk Scanning dependencies of target postprocess_mpi [ 88%] [ 88%] Building CXX object src/apps/CMakeFiles/postprocess_mpi.dir/postprocess_mpi.cpp.o Built target particle_polish Scanning dependencies of target prepare_subtomo [ 88%] [ 88%] Building CXX object src/apps/CMakeFiles/prepare_subtomo.dir/prepare_subtomo.cpp.o Built target particle_polish_mpi Scanning dependencies of target preprocess [ 89%] Building CXX object src/apps/CMakeFiles/preprocess.dir/preprocess.cpp.o Linking CXX executable ../../bin/relion_particle_sort_mpi Linking CXX static library ../../lib/librelion_gui_lib.a [ 89%] Built target relion_gui_lib Scanning dependencies of target preprocess_mpi [ 89%] Built target particle_sort_mpi Scanning dependencies of target project [ 89%] Building CXX object src/apps/CMakeFiles/preprocess_mpi.dir/preprocess_mpi.cpp.o [ 90%] Building CXX object src/apps/CMakeFiles/project.dir/project.cpp.o Linking CXX executable ../../bin/relion_preprocess Linking CXX executable ../../bin/relion_particle_symmetry_expand [ 90%] Built target preprocess Scanning dependencies of target reconstruct [ 90%] Built target particle_symmetry_expand Scanning dependencies of target reconstruct_mpi [ 90%] Building CXX object src/apps/CMakeFiles/reconstruct.dir/reconstruct.cpp.o [ 91%] Building CXX object src/apps/CMakeFiles/reconstruct_mpi.dir/reconstruct_mpi.cpp.o Linking CXX executable ../../bin/relion_postprocess Linking CXX executable ../../bin/relion_postprocess_mpi [ 91%] Built target postprocess Scanning dependencies of target ref_aberration_plot [ 91%] [ 91%] Built target postprocess_mpi Building CXX object src/apps/CMakeFiles/ref_aberration_plot.dir/ref_aberration_plot.cpp.o Scanning dependencies of target refine [ 92%] Building CXX object src/apps/CMakeFiles/refine.dir/refine.cpp.o Linking CXX executable ../../bin/relion_preprocess_mpi [ 92%] Built target preprocess_mpi Scanning dependencies 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