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Hi Kuang-Lei,
<div class="">I'd suggest moving this sort of installation question to the EMAN2 specific mailing list:</div>
<div class=""><a href="https://groups.google.com/forum/#!forum/eman2" class="">https://groups.google.com/forum/#!forum/eman2</a></div>
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<div class="">We will help you sort it out.</div>
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<font face="Courier" class=""><span style="font-size: 14px;" class="">--------------------------------------------------------------------------------------<br class="">
Steven Ludtke, Ph.D. <<a href="mailto:sludtke@bcm.edu" class="">sludtke@bcm.edu</a>> Baylor College of Medicine <br class="">
Charles C. Bell Jr., Professor of Structural Biology<br class="">
Dept. of Biochemistry and Molecular Biology (<a href="http://www.bcm.edu/biochem" class="">www.bcm.edu/biochem</a>)<br class="">
Academic Director, CryoEM Core (<a href="http://cryoem.bcm.edu" class="">cryoem.bcm.edu</a>)<br class="">
Co-Director CIBR Center (<a href="http://www.bcm.edu/research/cibr" class="">www.bcm.edu/research/cibr</a>)<br class="">
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<blockquote type="cite" class="">
<div class="">On Jun 26, 2018, at 10:44 AM, Kuang-Lei Tsai <<a href="mailto:tsaiklsd@gmail.com" class="">tsaiklsd@gmail.com</a>> wrote:</div>
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<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69);" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class="">Dear all,</span></div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69); min-height: 14px;" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class=""><br class="">
</span></div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69);" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class="">I was trying to install EMAN2 on my Centos 7 GPU workstation using the instruction of “<b class="">Use system OpenMPI and NumPy v1.9</b></span><span style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:10pt" class="">“.
The EMAN2 was downloaded yesterday from _continuous_build version.</span><span class="gmail-x_x_Apple-converted-space" style="font-family:Calibri,Arial,Helvetica,sans-serif;font-size:10pt"> </span></div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69); min-height: 14px;" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class=""><span class=""></span><br class="">
</span></div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69);" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class="">when installing the compiled Pydusa “bash <path to EMAN2 directory>/utils/install_pydusa_numpy.sh 1.9”,</span></div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69); min-height: 14px;" class="">
<br style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class="">
</div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69);" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class="">I got the message below,</span></div>
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<br style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class="">
</div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69);" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class="">+++ dirname EMAN2/utils/install_pydusa_numpy.sh</span></div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69);" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class="">++ cd EMAN2/utils/../recipes</span></div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69);" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class="">++ pwd -P</span></div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69);" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class="">+ RECIPES_DIR=/home/ray/EMAN2/recipes</span></div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69);" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class="">+ numpy_version=19</span></div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69);" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class="">+ conda remove fftw-mpi --force --yes</span></div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69);" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class="">Solving environment: done</span></div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69);" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class="">## Package Plan ##</span></div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69);" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class=""><span class="gmail-x_x_Apple-converted-space" style="font-size:10pt"> </span>environment location: /home/ray/EMAN2</span></div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69);" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class=""><span class="gmail-x_x_Apple-converted-space" style="font-size:10pt"> </span>removed specs:<span class="gmail-x_x_Apple-converted-space" style="font-size:10pt"> </span></span></div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69);" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class=""><span class="gmail-x_x_Apple-converted-space" style="font-size:10pt"> </span>- fftw-mpi</span></div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69);" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class="">The following packages will be REMOVED:</span></div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69);" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class=""><span class="gmail-x_x_Apple-converted-space" style="font-size:10pt"> </span>fftw-mpi: 3.3.6-2 cryoem</span></div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69);" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class="">Preparing transaction: done</span></div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69);" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class="">Verifying transaction: done</span></div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69);" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class="">Executing transaction: done</span></div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69);" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class="">+ conda install 'pydusa=1.15=np19*' --use-local --yes</span></div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69);" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class="">Solving environment: failed</span></div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69); min-height: 14px;" class="">
<br style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class="">
</div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69);" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class="">UnsatisfiableError: The following specifications were found to be in conflict:</span></div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69);" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class=""><span class="gmail-x_x_Apple-converted-space" style="font-size:10pt"> </span>- pydusa==1.15[build=np19*]</span></div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69);" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class=""><span class="gmail-x_x_Apple-converted-space" style="font-size:10pt"> </span>- tensorflow-gpu</span></div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69);" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class="">Use "conda info <package>" to see the dependencies for each package.</span></div>
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<br style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class="">
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<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69);" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class="">Is there anyone who can provide a solution for solving this error?<span class="gmail-x_x_Apple-converted-space" style="font-size:10pt"> </span></span></div>
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<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class="">Many thanks,</span></div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69); min-height: 14px;" class="">
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<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class="">Regards,</span></div>
<div style="margin: 0px; font-family: Tahoma, Geneva, sans-serif; font-size: 16px; line-height: normal; color: rgb(69, 69, 69);" class="">
<span style="font-size:10pt;font-family:Calibri,Arial,Helvetica,sans-serif" class="">Kuang-Lei</span></div>
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<p style="margin-top:0px;margin-bottom:0px" class=""></p>
<div class=""><span style="font-size:10pt" class="">Kuang-Lei Tsai PhD</span></div>
<div class=""><span style="font-size:10pt" class="">Assistant Professor</span></div>
<div class=""><span style="font-size:10pt" class="">Department of Biochemistry and Molecular Biology</span></div>
<div class=""><span style="font-size:10pt" class="">McGovern Medical School</span></div>
<div class=""><span style="font-size:10pt" class="">UT Health Science Center at Houston</span></div>
<div class=""><span style="font-size:10pt" class="">Email: <span style="color:rgb(0,111,201)" class=""><a href="mailto:Kuang-Lei.Tsai@uth.tmc.edu" class="">Kuang-Lei.Tsai@uth.tmc.edu</a></span></span></div>
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