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<div class="moz-cite-prefix">On 06/04/18 15:51, Pablo Conesa wrote:<br>
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cite="mid:7c0f80b0-8b29-97f1-f3ad-bc815d472cfa@cnb.csic.es">
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<p>*************************************************************************<br>
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<p>IMPORTANT: This is different than the:</p>
<p><a moz-do-not-send="true"
href="http://i2pc.es/2nd-i2pc-cryoem-facilities-meeting-madrid-june-26-27-2018/"><b>2nd
I2PC cryoEM Facilities Meeting. Madrid, June 26-27, 2018</b></a><br>
</p>
<p><b>aiming at facility managers </b>event.<br>
</p>
<p>**************************************************************************<br>
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<p>Dear Colleagues,</p>
<p>The Instruct Image Processing Center (I2PC) and
FEI/ThermoFisher are organizing the First FEI-I2PC Cryo-EM
Course on <a moz-do-not-send="true"
href="http://scipion.i2pc.es">Scipion</a> <b>for Facilities</b>,
focused on Facilities needs in data management and processing
and how they can be served by Scipion. <br>
<br>
Our Scipion team and collaborators have been working in the last
years in what we call streaming processing. We understand the
importance of having feedback during acquisition and this is
precisely what will be covered in this course. From basic
processing like movie alignment and CTF estimation on the fly,
to automatic picking and extraction. Scipion is equipped with
several consensus protocols that might help in your automated
pipeline to screen and select the best micrograph, CTFs or
particles. All with the benefit of Scipion flexibility and ”mix
and match” capabilities. Scipion is also able to gather all the
processing information and present it in a HTML report that
could be served over the web and automatically refreshed.
Additionally, Scipion API allows the integration with your LIMS
system. Currently released Scipion 1.2 goes in streaming all the
way to particle extraction, and during the course we will
present current work in 2D classification and initial volume, in
collaboration with XMIPP team.<br>
<br>
The topic of general pipelines for Single Particle Analysis with
Scipion will also be covered, as it will be Scipion usage on the
cloud.<br>
We are targeting a maximum of 20 attendees, and we count with 10
accommodation grants for students and Senior researchers from
Instruct countries.</p>
<p><b>Ideal attendee profile:</b> IT/developer person trying to
automatically process CryoEM acquisition data. (SPA)<br>
</p>
<p> Please, find more information at: <a
class="moz-txt-link-freetext"
href="http://i2pc.es/instruct-i2pc-fei-facility-based-image-processing-for-electron-microscopy-madrid-june-27-29-2018/"
moz-do-not-send="true">http://i2pc.es/instruct-i2pc-fei-facility-based-image-processing-for-electron-microscopy-madrid-june-27-29-2018/</a>
<br>
</p>
<p>Instruct countries: <a class="moz-txt-link-freetext"
href="https://www.structuralbiology.eu/content/countries--instruct"
moz-do-not-send="true">https://www.structuralbiology.eu/content/countries--instruct</a><br>
</p>
<p>We look forward meeting you in Madrid!<br>
</p>
<p>The Instruct Image Processing Center team<br>
</p>
<br>
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