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<p><span style="font-size: 12pt;">Hello everyone,</span><br>
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<p>1) Please clone with "<span>git clone git@github.com:cryofit/cryofit.git" at <<span>your phenix>/modules.</span></span></p>
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<p><span><span>For some reason, the clone address was an old one, please use <span style="font-family:Calibri,Helvetica,sans-serif,Helvetica,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; font-size:16px">"</span><span style="font-family:Calibri,Helvetica,sans-serif,Helvetica,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; font-size:16px">git
 clone git@github.com:cryofit/cryofit.git" instead (I already updated in dropbox).</span></span></span></p>
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<p><span><span><span style="font-family:Calibri,Helvetica,sans-serif,Helvetica,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; font-size:16px"></span></span></span></p>
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<p><span><span>2-1) Please use <span>gromacs-4.5.5_cryoFIT.zip which is a light version.</span></span></span></p>
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<p><span><span><span>For those of you who already used '<span>gromacs-4.5.5_cryo_fit_added', it is fine, just I assumed that it may had taken longer to download.</span></span></span></span></p>
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<p><span><span><span><span></span></span></span></span></p>
<p><span><span><span><span style="font-family:Calibri,Helvetica,sans-serif,Helvetica,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; font-size:16px"><br>
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<p><span><span><span><span style="font-family:Calibri,Helvetica,sans-serif,Helvetica,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; font-size:16px">2-2) </span><span style="font-family:Calibri,Helvetica,sans-serif,Helvetica,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; font-size:16px">gromacs-4.5.5_cryoFIT.zip
 can be anywhere. It doesn't have to be in ~/src. Living in ~/src wouldn't hurt, just it doesn't have to be.</span><br>
</span></span></span></p>
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</span></span></span></span></p>
<p><span><span><span><span style="font-family:Calibri,Helvetica,sans-serif,Helvetica,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; font-size:16px"><br>
</span></span></span></span></p>
<p><span><span><span>3) Overall installation process is</span></span></span></p>
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<p><span><span><span><span>- Install phenix</span></span></span></span></p>
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<p><span><span><span><span>- Link cryoFIT to Phenix (<span style="font-family:Calibri,Helvetica,sans-serif,Helvetica,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; font-size:16px">once cryoFIT is
 released as a public version, this won't be needed, but for now, it is needed)</span></span></span></span></span></p>
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<p><span><span><span><span>- Install cryoFIT (which is the modified version of gromacs)</span></span></span></span></p>
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<p><span><span><span>4) Ignore <span>install_openmpi.py </span></span></span></span></p>
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<p><span><span><span><span><span style="font-family:Calibri,Helvetica,sans-serif,Helvetica,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; font-size:16px">install_openmpi.py </span>lives in 0_install_cryoFIT/obsolete_but_keep_for_furture_use.
 Literally, it is obsolete to use now. Of course, depending on each system/version, openmpi may be needed. Please email me if you need a troubleshooting.</span></span></span></span></p>
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<p><span><span><span><span>I appreciate all of your interest/emails so far.</span></span></span></span></p>
<p><span><span><span><span> </span></span></span></span></p>
<p><span><span><span><span>Among those emails/users that I've met, ~10 of them is using cryoFIT well, 2~3 of them is still having trouble with the installation or I lost contact (?). </span></span></span></span></p>
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</span></span></span></span></p>
<p><span><span><span><span>If you have any comment, suggestions, inquiries, please let us know.</span></span></span></span></p>
<p><span><span><span><span><br>
</span></span></span></span></p>
<p><span><span><span style="font-family:Calibri,Helvetica,sans-serif,Helvetica,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; font-size:16px">I can't push to phenix developer repository, so there's
 some inconsistency/lagging between working version and currently pushed version. Once I have an authority to push to phenix </span><span style="font-family:Calibri,Helvetica,sans-serif,Helvetica,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; font-size:16px">developer
 repository by myself, I expect that I can synchronize everything (at least to the developer version).</span><br>
</span></span></p>
<p><span><span><span style="font-family:Calibri,Helvetica,sans-serif,Helvetica,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; font-size:16px"><br>
</span></span></span></p>
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<p><span><span>Thank you,</span></span></p>
<p><span><span>Doonam</span></span></p>
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